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Published April 4, 2025 | Version v0.7.2

NeuroConv

Description

v0.7.2 (April 4, 2025)

Deprecations and Changes

  • Split VideoInterface (now deprecated) into ExternalVideoInterface and InternalVideoInterface PR #1251 PR #1256 #1278
  • output_filepath deprecated on configure_and_write_nwbfile use nwbfile_path instead PR #1270
  • Temporary set a ceiling on pydantic <2.11 PR #1275

Bug Fixes

  • Fixed a check in _configure_backend on neurodata_object ndx_events.Events to work only when ndx-events==0.2.0 is used. PR #998
  • Added an append_on_disk_nwbfile argumento to run_conversion. This changes the semantics of the overwrite parameter from assuming append mode when a file exists to a more conventional safe writing mode where confirmation is required to overwrite an existing file. Append mode now is controlled with the append_on_disk_nwbfile. #1256

Features

  • Added SortedRecordingConverter to convert sorted recordings to NWB with correct metadata mapping between units and electrodes PR #1132
  • Support roiextractors 0.5.11 PR #1236
  • Added stub_test option to TDTFiberPhotometryInterface PR #1242
  • Added ThorImagingInterface for Thor TIFF files with OME metadata PR #1238
  • Added always_write_timestamps parameter to ExternalVideoInterface and InternalVideoInterface to force writing timestamps even when they are regular #1279

Improvements

  • Filter out warnings for missing timezone information in continuous integration PR #1240
  • FilePathType is deprecated, use FilePath from pydantic instead PR #1239
  • Change np.NAN to np.nan to support numpy 2.0 PR #1245
  • Re activate Plexon tests on Mac. Testing this for a while as they are unreliable tests #1195
  • Testing: only run tests for oldest and newest versions of python #1249
  • Improve error display on scan image interfaces PR #1246
  • Added concurrency to live-service-testing GitHub Actions workflow to prevent simultaneous write to the dandiset. #1252
  • Updated GitHub Actions workflows to use Environment Files instead of the deprecated set-output command #1259
  • Propagate verbose parameter from Converters to Interfaces #1253
  • Replace uses of scipy load_mat and h5storage loadmat with pymat_reader read_mat in CellExplorerSortingInterface #1254
  • Added camera device support for ExternalVideoInterface and InternalVideoInterface: PR #1282

Notes

If you use this software, please cite it as below.

Files

catalystneuro/neuroconv-v0.7.2.zip

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