Published April 4, 2025
| Version v0.7.2
Software
Open
NeuroConv
Description
v0.7.2 (April 4, 2025)
Deprecations and Changes
- Split VideoInterface (now deprecated) into ExternalVideoInterface and InternalVideoInterface PR #1251 PR #1256 #1278
output_filepathdeprecated onconfigure_and_write_nwbfileusenwbfile_pathinstead PR #1270- Temporary set a ceiling on pydantic
<2.11PR #1275
Bug Fixes
- Fixed a check in
_configure_backendon neurodata_object ndx_events.Events to work only when ndx-events==0.2.0 is used. PR #998 - Added an
append_on_disk_nwbfileargumento torun_conversion. This changes the semantics of the overwrite parameter from assuming append mode when a file exists to a more conventionalsafe writingmode where confirmation is required to overwrite an existing file. Append mode now is controlled with theappend_on_disk_nwbfile. #1256
Features
- Added
SortedRecordingConverterto convert sorted recordings to NWB with correct metadata mapping between units and electrodes PR #1132 - Support roiextractors 0.5.11 PR #1236
- Added stub_test option to TDTFiberPhotometryInterface PR #1242
- Added ThorImagingInterface for Thor TIFF files with OME metadata PR #1238
- Added
always_write_timestampsparameter to ExternalVideoInterface and InternalVideoInterface to force writing timestamps even when they are regular #1279
Improvements
- Filter out warnings for missing timezone information in continuous integration PR #1240
FilePathTypeis deprecated, useFilePathfrom pydantic instead PR #1239- Change
np.NANtonp.nanto support numpy 2.0 PR #1245 - Re activate Plexon tests on Mac. Testing this for a while as they are unreliable tests #1195
- Testing: only run tests for oldest and newest versions of python #1249
- Improve error display on scan image interfaces PR #1246
- Added concurrency to live-service-testing GitHub Actions workflow to prevent simultaneous write to the dandiset. #1252
- Updated GitHub Actions workflows to use Environment Files instead of the deprecated
set-outputcommand #1259 - Propagate
verboseparameter from Converters to Interfaces #1253 - Replace uses of scipy load_mat and h5storage loadmat with pymat_reader read_mat in
CellExplorerSortingInterface#1254 - Added camera device support for ExternalVideoInterface and InternalVideoInterface: PR #1282
Notes
Files
catalystneuro/neuroconv-v0.7.2.zip
Files
(1.6 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:4450ee27a432cfb2df6d8cc92534700e
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1.6 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/catalystneuro/neuroconv/tree/v0.7.2 (URL)
Software
- Repository URL
- https://github.com/catalystneuro/neuroconv