Published April 3, 2025 | Version v2
Dataset Open

DIA-BERT Source Data and Zenodo files

  • 1. Affiliated Hangzhou First People's Hospital, State Key Laboratory of Medical Proteomics, School of Medicine, Westlake University, Hangzhou, Zhejiang Province, China.

Description

Source Data.xlsx includes the raw data for all figures from the main manuscript and Supplementary Information. The data is organized by each figure in separate sheets within the Excel file.

 

Files.zip contains five seperate Excels:

File Name: File 1

Description: Comparison summary of identification between DIA-NN and DIA-BERT

 

File Name: File 2

Description: Identified peptide precursors and proteins using DIA-NN (in library-based mode) and DIA-BERT

 

File Name: File 3

Description: Parameters for simulated data by modified Synthedia

 

File Name: File 4

Description: Quantification of peptide precursors and proteins using DIA-NN (in library-based mode) and DIA-BERT in combined search

 

File Name: File 5

Description: Comparison of quantification performance on the three-species dataset using DIA-BERT with different quantification models and DIA-NN.

 

Files

Files.zip

Files (318.4 MB)

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md5:960575195264738165f17c2cac2ac55b
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md5:be1036c95c0470a2308b1e2aafeee72d
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