Female summary statistics from "Role of X chromosome and dosage compensation mechanisms in complex trait genetics"

Full female summary statistics generated in "Role of X chromosome and dosage compensation mechanisms in complex trait genetics". 

For UK biobank (UKB), GWAS were performed using BOLT-LMM v2.3.2. The files contain the following columns:

• SNP: rs number or ID string
• CHR: chromosome
• BP: base pair position mapped to assembly GRCh37
• GENPOS: genetic position either from bim file or interpolated from genetic map
• ALLELE1: first allele in bim file (usually the minor allele), used as the effect allele
• ALLELE0: second allele in bim file, used as the reference allele
• A1FREQ: frequency of first allele
• F_MISS: frequency of first allele
• CHISQ_LINREG: standard linear regression chi-square statistics
• P_LINREG: standard linear regression p-value
• BETA: effect size from BOLT-LMM approximation to infinitesimal mixed model
• SE: standard error of effect size
• CHISQ_BOLT_LMM_INF: infinitesimal mixed model association test chi-square statistics
• P_BOLT_LMM_INF: infinitesimal mixed model association test p-value
• CHISQ_BOLT_LMM: non-infinitesimal mixed model association test chi-square statistics
• P_BOLT_LMM: non-infinitesimal mixed model association test p-value

For FinnGen R10 (FG), GWAS were performed using REGENIE v2.2.4 pipeline. The files contain the following columns:

• #chrom: chromosome
• pos: base pair position mapped to assembly GRCh38
• ref: reference allele
• alt: alternative allele
• pval: analysis p-value
• mlogp: -log10(p-value)
• beta: effect size of alternate allele
• sebeta: standard error of effect size
• af_alt: allele frequency of the alternative allele