Published March 27, 2025 | Version v1

Imaging-Crystallophore: X-ray diffraction data and molecular dynamics / Hen-egg white Lysozyme protein

  • 1. ROR icon CEA Grenoble

Description

Data sets related to the publication "Synergistic Action of Crystallophore and Imaging‐Crystallophore Enhances the Production and Imaging of Protein Crystals" by Roux et al.

Crystallographic Data

Raw data collected at Proxima1 beamline (Soleil synchrotron, Saint Aubin, France) equipped with an Eiger-X 16M detector (Dectris Ltd.) using an X-ray photon energy of 12.4 keV (1.00 Å wavelength): Xo4-imaging_Raw-Data.tar file and associated XDS.INP file for integration. 

Results of first rounds of model refinement are contained in Xo4-imaging_PartialModel.pdb & Xo4-imaging_MapCoeff.mtz files

Anomalous Fourier synthesis: Anomalous_Fourier.map

Molecular Dynamics Trajectories 

Amber Force Field parameters (mol2 and frcmod) for Xo4 and ImXo4 complexes obtained with MCPB tool in Amber18.

Amber parameter files (prmtop) and trajectories pdb files at 300K, 1 bar, TIP3P water and Cl- counterions. Ions and water were stripped from the present files. HEWL Protein are described using Amberff14.

-       4hewl_imXo4 : 4 hewl protein in a crystal packing model with ImXo4 interacting with one D101. 1 replica of 200 ns.

-       1hewl_10Xo4 : 1 hewl protein in presence of 10 Xo4 in solution. 5 replicas of 200 ns.

-       1hewl_10imXo4 : 1 hewl protein in presence of 10 ImXo4 in solution. 5 replicas of 200 ns.

-       1hewl_1imXo4_9Xo4 : 1 hewl protein in presence of 9 :1 Xo4 :ImXo4 mix in solution. 5 replicas of 200 ns.

Files

param.zip

Files (14.8 GB)

Name Size
md5:201a6ac6fd92d4d86904bb8e42a130ec
276.4 MB Download
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202.0 MB Download
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210.9 MB Download
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132.4 MB Download
md5:ef16db544fe87427912f9005cbb09474
10.2 MB Download
md5:e6c32fdab2b02ff115246615ad92af62
1.5 MB Download
md5:f854230bb5755cab15de92f9a6a16a43
1.2 MB Download
md5:4f5ea54d4167638e4d063ccdf2a46c3b
1.2 MB Download
md5:6402e24be939edf6543069db3b29e521
3.5 MB Download
md5:8c415e177ef26c9ad33ec482f2ca645d
8.7 kB Preview Download
md5:68a8eb7fdf905cbe9c05ad3f36277b53
1.8 kB Download
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1.6 MB Download
md5:0724d8a2d3715712f471d953feb98a4c
184.4 kB Download
md5:ee8c5f2a558c5f46115541e0c14f38cc
14.0 GB Download

Additional details

Funding

Agence Nationale de la Recherche
GlowCryst ANR23-CE29-0002