Published March 24, 2025 | Version 1
Dataset Open

Synthetic Data from: Generative and Integrative Modeling for Transcriptomics with Formalin Fixed Paraffin Embedded Material

Authors/Creators

  • 1. university of western ontario
  • 2. ROR icon Western University

Description

This repository contains all synthetic datasets used in the manuscript, "Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material", currently published on BioRxiv:

https://www.biorxiv.org/content/10.1101/2025.02.21.639356v1

The datasets consist of AnnData files designed to be used by the PREFFECT (PaRaffin Embedded Formalin-FixEd Cleaning Tool, a probabilistic framework for the analysis of RNA sequencing data from formalin-fixed paraffin embedded (FFPE) samples. This software can be found on GitHub here:

https://github.com/hallettmiket/preffect/

Details of the various AnnData files provided in this repository is given in the 'ReadMe.rtf' file.

Files

synthetic_preffect_datasets.zip

Files (849.8 MB)

Name Size
md5:490f6d14c1c467eb79d895104433e73e
2.9 kB Download
md5:7b5bc1a9bf2dd01159b0c155d5ab15c5
849.8 MB Preview Download