CCR Collaborative Bioinformatics Resource [CCBR]
Published May 6, 2026 | Version v2.7.6
Software Open

CARLISLE: Cut And Run anaLysIS pipeLinE

Authors/Creators

  • 1. Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA

Description

  • Scheduler-safe Snakemake defaults: Replaced hardcoded -j 500 with safer defaults (-j 100, --max-jobs-per-second 1, --max-status-checks-per-second 0.1) for cluster-friendly submission and status polling behavior. (#223, @kopardev)

Notes

If you use CARLISLE, please cite it as below.

Files

CCBR/CARLISLE-v2.7.6.zip

Files (314.8 MB)

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md5:929b865eb281ba674ad7a48e992dfcb6
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Additional details

Related works

Is supplement to
Software: https://github.com/CCBR/CARLISLE/tree/v2.7.6 (URL)

Software

Repository URL
https://github.com/CCBR/CARLISLE