Published March 21, 2025
| Version 2025_03
Software
Open
imgag/megSAP: 2025_03
Authors/Creators
- Marc Sturm1
- Jakob Admard
- Leon Schütz
- Axel Gschwind2
- Alexander Ott
- c-schroeder
- Tim Stohn
- Benedikt Schnur3
- Ersoy Kocak4
- Francesc Muyas
- KilianIlius
- Alexander Seitz
- Caspar5
- Alexander Peltzer6
- Lennard Berger
- Alexandr Chernov
- Tobias Meissner7
- Institute of Medical Genetics and Applied Genomics
- Jan
- Marc Schindler8
- Marc Sturm
- 1. Institute of Medical Genetics and Applied Genomics
- 2. Institut für Medizinische Genetik und Angewandte Genomik
- 3. @MHH-Humangenetik
- 4. PhD Student at Central Institute of Mental Health
- 5. @imgag
- 6. Boehringer Ingelheim
- 7. Avera Cancer Institute
- 8. Red Hat GmbH
Description
What's Changed
- All tools are containerized now using Apptainer
- lrGS: many improvements and bug fixes, e.g. CRAM support, added Methylartist plots, etc.
- WES/WGS: Added option to call small variants with DeepVariant
Full Changelog: https://github.com/imgag/megSAP/compare/2024_09...2025_03
Files
imgag/megSAP-2025_03.zip
Additional details
Related works
- Is supplement to
- Software: https://github.com/imgag/megSAP/tree/2025_03 (URL)
Software
- Repository URL
- https://github.com/imgag/megSAP