Published February 11, 2015
| Version v0.12
Software
Open
Bio-ViennaNGS: Bio::ViennaNGS v0.12
Authors/Creators
- 1. University of Vienna
- 2. Institute for Theoretical Chemistry, University of Vienna
- 3. TBI
Description
- requires Perl >= 5.10.0
- minimum version of Bio::DB::Sam is 1.37
- integrated Bio::ViennaNGS::Bam
- integrated Bio::ViennaNGS::BamStat
- integrated Bio::ViennaNGS::BamStatSummary
- integrated Bio::ViennaNGS::Bed
- integrated Bio::ViennaNGS::ExtFeature
- integrated Bio::ViennaNGS::SpliceJunc
- integrated Bio::ViennaNGS::Tutorial
- integrated Bio::ViennaNGS::UCSC
- integrated Bio::ViennaNGS::FeatureLine
- added scripts/assembly_hub_generator.pl
- added scripts/bam_quality_stat.pl
- added scripts/Tutorial_pipeline00.pl
- added scripts/Tutorial_pipeline01.pl
- added scripts/Tutorial_pipeline02.pl
- added scripts/Tutorial_pipeline03.pl
- added scripts/track_hub_constructor.pl
- renamed Bio::ViennaNGS.pm to Bio::ViennaNGS::Util.pm
- migrated BAM specific code from Bio::ViennaNGS::Util to Bio::ViennaNGS::Bam
- migrated expression/normalization code from Bio::ViennaNGS::Util to Bio::ViennaNGS::Expression
- refactored scripts/normalize_multicov.pl
- removed scripts/motiffinda.pl from distribution
- added static templates for the Assembly and Track Hub generator
- updated POD and README
Files
Bio-ViennaNGS-v0.12.zip
Files
(1.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:716bd82c365c573fe4bd7221d65a1b38
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1.3 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/mtw/Bio-ViennaNGS/tree/v0.12 (URL)