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Published March 12, 2025 | Version 2025-03-12
Software Open

AlexsLemonade/OpenScPCA-analysis: 2025-03-12

  • 1. @AlexsLemonade
  • 2. Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation
  • 3. St. Anna Children's Cancer Research Institute (CCRI)
  • 4. Alex's Lemonade Stand Foundation
  • 5. UT Southwestern
  • 6. MD Anderson Cancer Center
  • 7. UCL

Description

What's Changed

  • Add submit a cell type annotation protocol Discussions template by @jaclyn-taroni in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1059
  • Attempt to fix submit a protocol syntax by @jaclyn-taroni in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1060
  • Add exploration notebook looking at validating consensus cell types by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1056
  • Update Grant Opportunity Guidelines for 2025 by @jaclyn-taroni in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1061
  • Add data.table and complexHeatmap to renv for cell-type-consensus by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1065
  • Render validation notebooks across all projects by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1064
  • Update readme for consensus cell type references by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1068
  • 07 annotations explore cnv by @maud-p in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1030
  • CI updates for cell-type-wilms-tumor-06 by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/1071

Full Changelog: https://github.com/AlexsLemonade/OpenScPCA-analysis/compare/v0.2.2...2025-03-12

Files

AlexsLemonade/OpenScPCA-analysis-2025-03-12.zip

Files (1.3 GB)

Additional details

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