Published March 10, 2025
| Version v0.6.2
Software
Open
github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3
- 1. UNIGE
- 2. University of Freiburg
- 3. Friedrich Miescher Institute for Biomedical Research
- 4. The Open University
- 5. Lerner Research Institute , Cleveland Clinic
Description
Complete preprocessing pipeline for 10X Genomics v3 single-cell RNA-seq data. Aligns raw FASTQ files using STARsolo, performs cell calling and quality filtering with DropletUtils, and formats outputs for seamless import into Seurat/Scanpy (Read10X function).
Files
github.com-iwc-workflows-fastq-to-matrix-10x-scrna-seq-fastq-to-matrix-10x-v3_v0.6.2.zip
Files
(7.3 kB)
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md5:987c82e15e96ca1a64e182c4eaf66827
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.14999800 (URL)
- https://dockstore.org/workflows/github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3:v0.6.2 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/versions/v0.6.2/PLAIN-gxformat2/descriptor/scrna-seq-fastq-to-matrix-10x-v3.ga (URL)