Published August 7, 2025
| Version v1
Dataset
Open
Processed Data for: Shape Space Explorer: Analysis of morphological transitions in migrating cells using similarity-based shape space mapping
Authors/Creators
-
1.
University of Warwick
Description
Both experiment 1 and 3 zip files contain MATLAB Data files:
- Bigcellarrayandindex.mat
- BigCellDataStruct.mat
- CellShapeData.mat
- CellShapeData_med.mat
- CellShapeData_slim.mat
- Morphframe.mat
Bigcellarrayandindex.mat and BigCellDataStruct.mat contain the cell contours resulting from semi-automated image segmentation.
CellShapeData.mat contains the results of the shape manifold embedding. CellShapeData_med.mat and CellShapeData_slim.mat contain subsets of the CellShapeData.mat to improve data load times for subsequent anaysis.
Morphframe.mat contains the region properties of the cell contours.
Experiment 3 contains the results from untreated RPE cells. Experiment 1 contains results from siKif1C RPE cells (stacks 1-45) and siControl RPE cells (stacks 46-88).
Files
experiment1_SSEresults.zip
Additional details
Funding
- Engineering and Physical Sciences Research Council
- Warwick Systems Biology Doctoral Training Centre
- Biotechnology and Biological Sciences Research Council
- Warwick Systems Biology Doctoral Training Centre
- Lister Institute of Preventive Medicine
- University of Warwick