Unveiling four new taxa and Nigrosynnema natarajanensis comb. nov. in Stachybotryaceae (Hypocreales) from monocotyledon plants in Guangdong Province, China
Authors/Creators
- 1. Mae Fah Luang University, Chiang Rai, Thailand|Zhongkai University of Agriculture and Engineering, Guangzhou, China
- 2. Zhongkai University of Agriculture and Engineering, Guangzhou, China
- 3. Vishnugupta Vishwavidyapeetam, Gokarna, India
- 4. Mae Fah Luang University, Chiang Rai, Thailand
- 5. Zhongkai University of Agriculture and Engineering, Guangzhou, China|Mae Fah Luang University, Chiang Rai, Thailand
- 6. King Saud University, Riyadh, Saudi Arabia
- 7. Mae Fah Luang University, Chiang Rai, Thailand|Zhongkai University of Agriculture and Engineering, Guangzhou, China|King Saud University, Riyadh, Saudi Arabia
Description
Members of Stachybotryaceae are distributed worldwide, with certain species playing a significant role as bio-degraders and some causing diseases in plants, humans, and animals. Other species within this family can be found in soil and have been reported as saprobes in various plants. In this study (2021–2022), fungal taxa resembling Stachybotryaceae, isolated from dead leaves of Agave sisalana and a dead stem of Wurfbainia villosa in Guangdong Province, China, are identified based on morphological characteristics and molecular data. Multi-locus phylogeny based on calmodulin (cmdA), internal transcribed spacer (ITS), the large subunit nuclear rDNA (LSU), RNA polymerase II second largest subunit (rpb2), the partial translation elongation factor 1-α (tef1-α), and β-tubulin (tub2) revealed that nine strains were grouped within Stachybotryaceae. Nigrosynnema guangdongense gen. et sp. nov., typical of Stachybotryaceae but having unusual olivaceous brown to black synnemata that are narrower towards the apex and produce phialidic, aseptate, slimy conidia in black and glistening heads, is introduced. Additionally, Brevistachys wurfbainiae and Sirastachys guangdongensis are introduced as new species. Stachybotrys microsporus is a new host record for Agave sisalana. The present study provides comprehensive descriptions, illustrations, and molecular data analyses of the newly discovered taxa and newly recorded species as a taxonomic and phylogenetic contribution to Stachybotryaceae. Furthermore, a new combination, Nigrosynnema natarajanensis, is proposed for the previously described Virgatospora natarajanensis.
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References
- Ben HY, Gao W, Qu HY, Chai AL, Shi YX, Xie XW, Li BJ (2015) New host record of Myrothecium roridum causing leaf spot on Abutilon megapotamicum from China. Journal of Phytopathology 164(7–8): 563–566. https://doi.org/10.1111/jph.12439
- Bills FB, Rossman AY, Polishook JD (1994) Rediscovery of Albosynnema elegans and Solheimia costaspora. Sydowia 46: 1–10.
- Bisby G (1943) Stachybotrys. Transactions of the British Mycological Society 26(3–4): 133–143. https://doi.org/10.1016/S0007-1536(43)80018-8
- Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T (2009) trimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25(15): 1972–1973. https://doi.org/10.1093/bioinformatics/btp348
- Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91(3): 553–556. https://doi.org/10.1080/00275514.1999.12061051
- Cooke MC (1883) New American fungi. Grevillea 12: 22–33. https://doi.org/10.1177/000313138303300209
- Corda ACJ (1837) Icones fungorum hucusque cognitorum 1: 1–32.
- Crous PW, Shivas RG, Quaedvlieg WV, van der Bank M, Zhang Y, Summerell BA, Guarro J, Wingfield MJ, Wood AR, Alfenas AC, Braun U, Cano-Lira JF, García D, Marin-Felix Y, Alvarado P, Andrade JP, Armengol J, Assefa A, den Breeÿen A, Camele I, Cheewangkoon R, De Souza JT, Duong TA, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal DR, King A, Lechat C, Lombard L, Mang SM, Marbach PAS, Marincowitz S, Marin-Felix Y, Montaño-Mata NJ, Moreno G, Perez CA, Pérez Sierra AM, Robertson JL, Roux J, Rubio E, Schumacher RK, Stchigel AM, Sutton DA, Tan YP, Thompson EH, Vanderlinde E, Walker AK, Walker DM, Wickes BL, Wong PTW, Groenewald JZ (2014) Fungal Planet description sheets: 214–280. Persoonia 32(1): 184–306. https://doi.org/10.3767/003158514X682395
- Crous PW, Schumacher RK, Wingfield MJ, Akulov A, Denman S, Roux J, Braun U, Burgess TI, Carnegie AJ, Váczy KZ, Guatimosim E, Schwartsburd PB, Barreto RW, Hernández-Restrepo M, Lombard L, Groenewald JZ (2018) New and Interesting Fungi. 1. Fungal Systematics and Evolution 1(1): 169–216. https://doi.org/10.3114/fuse.2018.01.08
- D'Souza MA, Singh SK, Bhat DJ (2002) New conidial fungi from Andaman Islands, India. Mycotaxon 82: 133–143.
- Deighton FC (1960) African Fungi. I. Mycological Papers 78: 1–43. https://doi.org/10.1016/S0007-1536(60)80034-4
- Doilom M, Dissanayake AJ, Wanasinghe DN, Boonmee S, Liu JK, Bhat DJ, Taylor JE, Bahkali AH, McKenzie EH, Hyde KD (2017) Microfungi on Tectona grandis (teak) in Northern Thailand. Fungal Diversity 82(1): 107–182. https://doi.org/10.1007/s13225-016-0368-7
- Ellis MB (1971) Dematiaceous hyphomycetes. Commonwealth Mycological Institute, Kew, Surrey, England, 7–12. https://doi.org/10.1079/9780851986180.0000
- Finley DE (1967) Fusicoccum canker, a new disease of Russian olive. Mycologia 59(3): 535–541. https://doi.org/10.2307/3756776
- Galloway LD (1933) Note on an unusual mould fungus. Transactions of the British Mycological Society 18(2): 163–166. https://doi.org/10.1016/S0007-1536(33)80005-2
- Glass NL, Donaldson GC (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61(4): 1323–1330. https://doi.org/10.1128/aem.61.4.1323-1330.1995
- Gordillo A, Decock C (2017) Myrothecium-like (Ascomycota, Hypocreales) species from tropical areas: Digitiseta gen. nov. and additions to Inaequalispora and Parvothecium. Mycological Progress 17(1–2): 179–190. https://doi.org/10.1007/s11557-017-1302-4
- Groenewald JZ, Nakashima C, Nishikawa J, Shin HD, Park JH, Jama AN, Groenewald M, Braun U, Crous PW (2013) Species concepts in Cercospora: Spotting the weeds among the roses. Studies in Mycology 75: 115–170. https://doi.org/10.3114/sim0012
- Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
- Hernandez-Restrepo M, Schumacher RK, Wingfield MJ, Ahmad I, Cai L, Duong TA, Edwards J, Gene J, Groenewald JZ, Jabeen S, Khalid AN, Lombard L, Madrid H, Marin-Felix Y, Marincowitz S, Miller AN, Rajeshkumar KC, Rashid A, Sarwar S, Stchigel AM, Taylor PWJ, Zhou N, Crous PW (2016) Fungal Systematics and Evolution: FUSE 2. Sydowia 68: 193–230. https://doi.org/10.12905/0380.sydowia68-2016-0193
- Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17(8): 754–755. https://doi.org/10.1093/bioinformatics/17.8.754
- Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Thilini Chethana KW, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan L, Lee H, Li JF, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki L, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz A, Li FA, Senanayake WJ, Shang IC, Daranagama QJ, de Silva DA, Thambugala NI, Abdel-Wahab KM, Bahkali MA, Berbee AH, Boonmee ML, Bhat S, Bulgakov DJ, Buyck TS, Camporesi B, Castañeda-Ruiz E, Chomnunti RF, Doilom P, Dovana M, Gibertoni F, Jadan TB, Jeewon M, Jones R, Kang EBG, Karunarathna JC, Lim SC, Liu YW, Liu JK, Saisamorn Lumyong ZY, Maharachchikumbura HLP, Matočec SSN, Mc N, Kenzie EHC, Mešić A, Miller D, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini Z, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer PE (2017) Fungal diversity notes 603–708: Taxonomic and phylogenetic notes on genera and species. Fungal Diversity 87(1): 1–235. https://doi.org/10.1007/s13225-017-0391-3
- Hyde KD, Norphanphoun C, Maharachchikumbura SSN, Bhat DJ, Jones EBG, Bundhun D, Chen YJ, Bao DF, Boonmee S, Calabon MS, Chaiwan N, Chethana KWT, Dai DQ, Dayarathne MC, Devadatha B, Dissanayake AJ, Dissanayake LS, Doilom M, Dong W, Fan XL, Goonasekara ID, Hongsanan S, Huang SK, Jayawardena RS, Jeewon R, Karunarathna A, Konta S, Kumar V, Lin CG, Liu JK, Liu NG, Luangsa-Ard J, Lumyong S, Luo ZL, Marasinghe DS, McKenzie EHC, Niego AGT, Niranjan M, Perera RH, Phukhamsakda C, Rathnayaka AR, Samarakoon MC, Samarakoon SMBC, Sarma VV, Senanayake IC, Shang QJ, Stadler M, Tibpromma S, Wanasinghe DN, Wei DP, Wijayawardene NN, Xiao YP, Yang J, Zeng XY, Zhang SN, Xiang MM (2020) Refined families of Sordariomycetes. Mycosphere 11(1): 305–1059. https://doi.org/10.5943/mycosphere/11/1/7
- Hyde KD, Noorabadi MT, Thiyagaraja V, He MQ, Johnston PR, Wijesinghe SN, Armand A, Biketova AY, Chethana KWT, Erdoğdu M, Ge ZW, Groenewald JZ, Hongsanan S, Kušan I, Leontyev DV, Li DW, Lin CG, Liu NG, Maharachchikumbura SSN, Matočec N, May TW, McKenzie EHC, Mešić A, Perera RH, Phukhamsakda C, Piątek M, Samarakoon MC, Selcuk F, Senanayake IC, Tanney JB, Tian Q, Vizzini A, Wanasinghe DN, Wannasawang N, Wijayawardene NN, Zhao RL, Abdel-Wahab MA, Abdollahzadeh J et al. (2024) The 2024 Outline of Fungi and fungus-like taxa. Mycosphere 15: 5146–6239. https://doi.org/10.5943/mycosphere/15/1/25
- Iwama R, Sasano Y, Hiramatsu T, Otake S, Suzuki E, Hasumi K (2022) Amine-Regulated pri-SMTP oxidation in SMTP biosynthesis in Stachybotrys: Possible implication in nitrogen acquisition. Journal of Fungi 8(9): 975. https://doi.org/10.3390/jof8090975
- Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat DJ, Buyck B, Cai L, Dai YC, Abd-Elsalam KA, Ertz D, Hidayat I, Jeewon R, Jones EBG, Bahkali AH, Karunarathna SC, Liu JKJ, Luangsaard J, Lumbsch H, Maharachchikumbura T, Mc SSN, Kenzie EHC, Moncalvo JM, Ghobad-Nejhad M, Nilsson H, Pang KL, Pereira OL, Phillips AJL, Raspé O, Rollins AW, Romero AI, Etayo J, Selçuk F, Stephenson SL, Suetrong S, Taylor JE, Tsui CKM, Vizzini A, Abdel-Wahab MA, Wen TC, Boonmee S, Dai DQ, Daranagama DA, Dissanayake AJ, Ekanayaka AH, Fryar SC, Hongsanan S, Jayawardena RS, Li WJ, Perera RH, Phookamsak R, de Silva NL, Thambugala KM, Tian Q, Wijayawardene NN, Zhao RL, Zhao Q, Kang JC, Promputtha I (2015) The faces of fungi database: Fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74(1): 3–18. https://doi.org/10.1007/s13225-015-0351-8
- Jeewon R, Hyde KD (2016) Establishing species boundaries and new taxa among fungi: Recommendations to resolve taxonomic ambiguities. Mycosphere 7(11): 1669–1677. https://doi.org/10.5943/mycosphere/7/11/4
- Jiang YL, Zhang TY (2009) Notes on soil dematiaceous hyphomycetes from Sichuan Province, China. Mycosystema 28: 644–647.
- Jie CY, Geng K, Jiang YL, Xu JJ, Hyde KD, McKenzie EH, Zhang TY, Bahkali AH, Li DW, Wang Y (2012) Stachybotrys from soil in China, identified by morphology and molecular phylogeny. Mycological Progress 12(4): 693–698. https://doi.org/10.1007/s11557-012-0878-y
- Jong SC, Davis EE (1976) Contributions to the knowledge of Stachybotrys and Memnoniella in culture. Mycotaxon 3: 409–485.
- Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution 30(4): 772–780. https://doi.org/10.1093/molbev/mst010
- Li QR, Jiang YL (2011) Stachybotrys subreniformis, new from soil in China. Mycotaxon 115(1): 171–173. https://doi.org/10.5248/115.171
- Li BJ, Ben HY, Shi YX, Xie XW, Chai AL (2014) First report of Myrothecium roridum causing leaf spot on Zantedeschia aethiopica in China. Plant Disease 98(6): 854. https://doi.org/10.1094/PDIS-11-13-1140-PDN
- Liao C, Senanayake IC, Dong W, Thilini Chethana KW, Tangtrakulwanich K, Zhang Y, Doilom M (2023) Taxonomic and phylogenetic updates on Apiospora: Introducing four new species from Wurfbainia villosa and grasses in China. Journal of Fungi 9(11): 1087. https://doi.org/10.3390/jof9111087
- Lin CG, McKenzie EHC, Bhat DJ, Ran SF, Chen Y, Hyde KD, Li DW, Wang Y (2016) Stachybotrys-like taxa from karst areas and a checklist of stachybotrys-like species from Thailand. Mycosphere 7(9): 1273–1291. https://doi.org/10.5943/mycosphere/7/9/3
- Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among ascomycetes: Evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16(12): 1799–1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Liu NG, Hyde KD, Sun YR, Bhat DJ, Jones EBG, Jumpathong J, Lin CG, Lu YZ, Yang J, Liu LL, Liu ZY, Liu JK (2024) Notes, outline, taxonomy and phylogeny of brown-spored hyphomycetes. Fungal Diversity. https://doi.org/10.1007/s13225-024-00539-6
- Lombard L, Houbraken J, Decock C, Samson RA, Meijer M, Réblová M, Groenewald JZ, Crous PW (2016) Generic hyper-diversity in Stachybotriaceae. Persoonia 36(1): 156–246. https://doi.org/10.3767/003158516X691582
- Maharachchikumbura SSN, Chen Y, Ariyawansa HA, Hyde KD, Haelewaters D, Perera RH, Samarakoon MC, Wanasinghe DN, Bustamante DE, Liu JK, Lawrence DP, Cheewangkoon R, Stadler M (2021) Integrative approaches for species delimitation in Ascomycota. Fungal Diversity 109(1): 155–179. https://doi.org/10.1007/s13225-021-00486-6
- Mapook A, Hyde KD, McKenzie EHC, Jones EBG, Bhat DJ, Jeewon R, Stadler M, Samarakoon MC, Malaithong M, Tanunchai B, Buscot F, Wubet T, Purahong W (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). Fungal Diversity 101(1): 1–175. https://doi.org/10.1007/s13225-020-00444-8
- Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop (GCE), San Diego Supercomput., 1–8. https://doi.org/10.1109/GCE.2010.5676129
- Morris EF (1967) Studies on the synnematous fungi imperfecti. Mycopathologia 33(2): 179–185. https://doi.org/10.1007/BF02053449
- O'Donnell K, Kistler HC, Cigelnik E, Ploetz RC (1998) Multiple evolutionary origins of the fungus causing Panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Sciences of the United States of America 95(5): 2044–2049. https://doi.org/10.1073/pnas.95.5.2044
- Rambaut A (2009) FigTree v1.4: Tree figure drawing tool. Institute of Evolutionary Biology, Edinburgh. http://tree.bio.ed.ac.uk/software/figtree/ [accessed on 12 October 2024]
- Rathnayaka AR, Tennakoon DS, Jones EBG, Wanasinghe DN, Bhat DJ, Priyashantha AH, Stephenson SL, Tibpromma S, Karunarathna SC (2024) Significance of precise documentation of hosts and geospatial data of fungal collections, with an emphasis on plant-associated fungi. New Zealand Journal of Botany 31: 1–28. https://doi.org/10.1080/0028825X.2024.2381734
- Saccardo PA, Saccardo DA (1906) Sylloge Fungorum 18: 1–839. [Italy, Padua; PA Saccardo.]
- Samarakoon BC, Wanasinghe DN, Phookamsak R, Bhat DJ, Chomnunti P, Karunarathna SC, Lumyong S (2021) Stachybotrys musae sp. nov., S. microsporus, and Memnoniella levispora (Stachybotryaceae, Hypocreales) found on bananas in China and Thailand. Life 11(4): 323. https://doi.org/10.3390/life11040323
- Senanayake IC, Rathnayaka AR, Marasinghe DS, Calabon MS, Gentekaki E, Lee HB, Hurdeal VG, Pem D, Dissanayake LS, Wijesinghe SN, Bundhun D, Nguyen TT, Goonasekara ID, Abeywickrama PD, Bhunjun CS, Jayawardena RS, Wanasinghe DN, Jeewon R, Bhat DJ, Xiang MM (2020) Morphological approaches in studying fungi: Collection, examination, isolation, sporulation and preservation. Mycosphere 11(1): 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
- Smith G (1962) Some new and interesting species of micro-fungi. Transactions of the British Mycological Society 45(3): 387–394. https://doi.org/10.1016/S0007-1536(62)80077-1
- Stamatakis A (2014) RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30(9): 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
- Subramanian CV, Bhat DJ (1978) Putagraivam, a new genus of the Hyphomycetes. Proceedings of the Indian Academy of Sciences. Section B, Biological Sciences 87(5): 99–104. https://doi.org/10.1007/BF03046958
- Tibpromma S, Hyde KD, McKenzie EHC, Bhat DJ, Phillips AJ, Wanasinghe DN, Samarakoon MC, Jayawardena RS, Dissanayake AJ, Tennakoon DS, Doilom M, Phookamsak R, Tang AMC, Xu JC, Mortimer PE, Promputtha I, Maharachchikumbura SSN, Khan S, Karunarathna SC (2018) Fungal diversity notes 840–928: Micro-fungi associated with Pandanaceae. Fungal Diversity 93(1): 1–160. https://doi.org/10.1007/s13225-018-0408-6
- Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Von Höhnel FV (1924) Studien über Hyphomyzeten. Zentralblatt für Bakteriologie und Parasitenkunde Abteilung 2: 1–26.
- Wang Y, Hyde KD, McKenzie EHC, Jiang YL, Li DW, Zhao DG (2015) Overview of Stachybotrys (Memnoniella) and current species status. Fungal Diversity 71(1): 17–83. https://doi.org/10.1007/s13225-014-0319-0
- White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR protocols: a guide to methods and applications, Academic Press, New York, 15–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wijayawardene NN, Hyde KD, Dai DQ, Sánchez-García M, Goto BT, Saxena RK, Erdoğdu M, Selçuk F, Rajeshkumar KC, Aptroot A, Błaszkowski J, Boonyuen N, da Silva GA, de Souza FA, Dong W, Ertz D, Haelewaters D, , Jones EBG, Karunarathna SC, Kirk PM, Kukwa M, Kumla J, Leontyev DV, Lumbsch HT, Maharachchikumbura SSN, Marguno F, Martínez-Rodríguez P, Mešić A, Monteiro JS, Oehl F, Pawłowska J, Pem D, Pfliegler WP, Phillips AJL, Pošta A, He MQ, Li JX, Raza M, Sruthi OP, Suetrong S, Suwannarach N, Tedersoo L, Thiyagaraja V, Tibpromma S, Tkalčec Z, Tokarev YS, Wanasinghe DN, Wijesundara DSA, Wimalaseana SDMK, Madrid H, Zhang GQ, Gao Y, Sánchez-Castro I, Tang LZ, Stadler M, Yurkov A, Thines M (2022) Outline of Fungi and fungus-like taxa – 2021. Mycosphere 13: 53–453. https://doi.org/10.5943/mycosphere/13/1/2
- Zeng XY, Tan TJ, Tian FH, Wang Y, Wen TC (2023) OFPT: A one-stop software for fungal phylogeny. Mycosphere 14(1): 1730–1741. https://doi.org/10.5943/mycosphere/14/1/20