Published February 17, 2015 | Version v1
Dataset Open

Source code and datasets used to link new waves of plague outbreaks in medieval Europe to climate fluctuations affecting the reservoirs of the disease in Asia.

  • 1. Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Norway
  • 2. Swiss Federal Research Institute for Forest Snow and Landscape, Birmensdorf, Switzerland
  • 3. Department of Physiology, Institute of Basic Medical Sciences, University of Oslo, Norway

Description

The zipfile contains the project directory which includes the source code and datasets used in the paper on Climate-driven introduction of the Black Death and successive plague reintroductions into Europe, as published in Proceedings of the National Academy of Sciences (PNAS). Access the paper at http://www.doi.org/pnas.1412887112

If you are not familiar with Clojure, Leiningen, and its project directory format, see http://clojure.org/getting_started for one of the IDE's to run the clojure code in, and use http://leiningen.org/ as the project / dependency manager.

Files

pulse-of-asia-datasets-sourcecode.zip

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Additional details

Related works

Is supplement to
10.1073/pnas.1412887112 (DOI)

Funding

PLAGUEECO2GENO – Reconstructing the imprint of ecology on the genetic phylogeography of the Plague in Central Asia and China. 302329
European Commission
MEDPLAG – The medieval plagues: ecology, transmission modalities and routes of the infections. 324249
European Commission