Published March 3, 2025
| Version v0.7.0
Software
Open
NeuroConv
Description
v0.7.0 (March 3, 2025)
Deprecations and Changes
- Interfaces and converters now have
verbose=Falseby default PR #1153 - Added
metadataandconversion_optionsas arguments toNWBConverter.temporally_align_data_interfacesPR #1162 - Deprecations in the ecephys pipeline: compression options, old iterator options, methods that did not end up in *to_nwbfile and the
get_schema_from_method_signaturefunction PR #1207 - Removed all deprecated functions from the roiextractors module:
add_fluorescence_traces,add_background_fluorescence_traces,add_summary_images,add_segmentation, andwrite_segmentation#1233
Bug Fixes
run_conversiondoes not longer trigger append mode whennwbfile_pathpoints to a faulty file PR #1180DatasetIOConfigurationnow recommendschunk_shape = (len(candidate_dataset),)for datasets with compound dtypes as used by hdmf >= 3.14.6.PR #1146OpenEphysBinaryRecordingInterfaceno longer stores analog data as anElectricalSeriesPR #1179
Features
- Added
PlexonLFPInterfacefor converting PlexonFPl-Low Pass Filteredstream data PR #1209 - Added
ImageInterfacefor writing large collection of images to NWB and automatically map the images to the correct NWB data types PR #1190 - Fixed AudioInterface to properly handle 24-bit WAV files by disabling memory mapping for 24-bit files PR #1226
- Use the latest version of ndx-pose for
DeepLabCutInterfaceandLightningPoseDataInterfacePR #1128 - Added a first draft of
.clinerulesPR #1229 - Support for pynwb 3.0 PR #1231
- Support for hdmf 4.0 PR #1204
- Support for numpy 2.0 PR #1206
- Support Spikeinterface 0.102 PR #1194
Improvements
- Simple writing no longer uses a context manager PR #1180
- Added Returns section to all getter docstrings PR #1185
- ElectricalSeries have better chunking defaults when data is passed as plain array PR #1184
- Ophys interfaces now call
get_metadataby default when no metadata is passed PR #1200 and PR #1232
Notes
Files
catalystneuro/neuroconv-v0.7.0.zip
Files
(1.6 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:cf2338947a7d922b211acfe6328bb0c0
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1.6 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/catalystneuro/neuroconv/tree/v0.7.0 (URL)
Software
- Repository URL
- https://github.com/catalystneuro/neuroconv