Supplementary materials to ""A practical guide to long-term field PAM chlorophyll fluorescence measurements: setup, installation, data processing with R package 'LongTermPAM' and interpretation".

This supplementary materials include the following files: (1) animation illustrating the different filtering steps, (2) PDF drawings and STEP files for the MONI-PAM field installation supports, and (3) example data and figure outputs from the LongTermPAM R Package.

1. Filtering_steps_1-6_for_example2014-2015.gif and Filtering_steps_1-6_for_example2016-2017.gif show all the filtering steps in a 2-3 minute animation and can be opened using the default photo viewer on your computer.
2. MONI-PAM field installation supports in CAD and PDF formats.zip includes the drawings of each part of the MONI-PAM installation support, provided in.STEP, .SLDPRT and .PDF file formats, as presented in Fig. SI of the manuscript.
3. Example Data and Figure Outputs from the LongTermPAM R Package.zip includes all outputs from two example datasets, comprising 7 folders. See details in the Table below: 

   Folder name	Description
   reorganized_data	Output data from step 1 'prepare data' (Fig.2 in the manuscript)
   saved_data	Output data from steps 2-3 'filter data' and 'get parameters'
   figure1_before_filter	Visualized data figures before filtering, with data from step 1 'prepare data'
   figure2_during_filter	Visualized data figures for eaching filtering steps,with data from step 2 'filter data'
   figure3_FmR_F0R	Correlation figures of FM and FV/FM before and after data filtering to estimate FmR and F0R, with data from step 3 'get parameters'
   figure4_diurnal_parameters	Visualzed data figures of diurnal chlorophyll fluorescence quenching and yield parameters calculated from the filtered data
   figure5_seasonal_parameters	Visualzed data figures of seasonal chlorophyll fluorescence yield and quenching parameters calculated from the filtered data