Published March 3, 2025 | Version v1

Phikon-Extracted features dataset from TCGA-THYM WSIs

  • 1. ROR icon Imam Abdulrahman Bin Faisal University

Description

We utilized a publicly available WSI dataset from the TCGA-THYM project, consisting of 242 slides across six thymic tumor subtypes [A, AB, B1, B2, B3, CA]. WSIs were split into patches using the Yottixel method (Kalra et al., 2020). Phikon (Filiot et al., 2023), a pathology-SSL feature extractor, was then applied. Extracted features were organized into uniformly sized 1k bags via a chunking strategy. Bags and their labels were split (80:20) into train-test pth files.

Files

Files (1.6 GB)

Name Size
md5:6c4f311abcd8a88b0cab35fea4606d1b
325.6 MB Download
md5:d8e56b01498780ff776ff3791f2fb5a0
1.3 GB Download

Additional details

Related works

Software

Repository URL
https://github.com/hkussaibi/WSI2bags
Programming language
Python
Development Status
Active