Phikon-Extracted features dataset from TCGA-THYM WSIs
Description
We utilized a publicly available WSI dataset from the TCGA-THYM project, consisting of 242 slides across six thymic tumor subtypes [A, AB, B1, B2, B3, CA]. WSIs were split into patches using the Yottixel method (Kalra et al., 2020). Phikon (Filiot et al., 2023), a pathology-SSL feature extractor, was then applied. Extracted features were organized into uniformly sized 1k bags via a chunking strategy. Bags and their labels were split (80:20) into train-test pth files.
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Additional details
Related works
- Cites
- Dataset: 10.1101/2024.06.07.24308609 (DOI)
- Preprint: 10.1101/2025.05.11.25327389 (DOI)
Software
- Repository URL
- https://github.com/hkussaibi/WSI2bags
- Programming language
- Python
- Development Status
- Active