Published April 2, 2025 | Version revision1
Dataset Open

pQTL-mapping-rev1

Authors/Creators

  • 1. ROR icon Berlin Institute of Health at Charité - Universitätsmedizin Berlin
  • 2. ROR icon Charité - Universitätsmedizin Berlin
  • 3. Charite Universitaetsmedizin Berlin
  • 4. ROR icon The Francis Crick Institute

Description

Contains code to replicate genetic mapping and figures for pQTN manuscript (submitted; pre-print on bioRxiv):

https://www.biorxiv.org/content/10.1101/2024.10.18.619054v1

 

plotting_master_script.m will generate the figures in the manuscript. Specify your local code_directory, desired output_directory for the figure files, and download the dependencies and specify the dependency_directory to run the script.

 
Also included are functions and example Snakemake file for pQTN mapping on SWATH-MS data.

Files

Files (7.8 GB)

Name Size
md5:cc583691957e04e074f4306772793ecd
421.2 kB Download
md5:42b5e528320cb9a8e05b1597f13965bc
7.8 GB Download

Additional details

Software

Repository URL
https://github.com/cjakobson/pqtl-mapping