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Published February 25, 2025 | Version v1
Software documentation Open

stPipe - a comprehensive tool facilitating spatial transcriptomics benchmarking

Authors/Creators

  • 1. ROR icon Walter and Eliza Hall Institute of Medical Research

Contributors

Researcher:

  • 1. ROR icon Walter and Eliza Hall Institute of Medical Research

Description

The stPipe package provides a comprehensive pipeline for preprocessing sequencing-based spatial transcriptomics data, including 10X Visium, BGI Stereo-seq, Slide-seq, and Curio-seeker.

Files

Files (173.1 MB)

Name Size Download all
md5:21f67a303e3abc3f331997df55e68f18
74.0 MB Download
md5:b460a2ad724dbf684e114249c534df8d
99.1 MB Download

Additional details

Software

Repository URL
https://github.com/mritchielab/stPipe
Programming language
R , C++ , Python
Development Status
Active