Published February 24, 2025 | Version v3
Dataset Open

Spotiflow - manuscript data

Authors/Creators

  • 1. École Polytechnique Fédérale de Lausanne
  • 2. EMBL Heidelberg Genome Biology
  • 3. ROR icon European Molecular Biology Laboratory
  • 4. Ecole Polytechnique Federale de Lausanne
  • 5. EDMO icon University of Heidelberg
  • 6. ROR icon TU Dresden

Description

This repository contains data used in the manuscript "Spotiflow: accurate and efficient spot detection with fluroescence microscopy" (Dominguez Mantes et al. 2025). For more information on the data, please refer to the README.md file as well as the manuscript itself.

Files

e12_5_mouse_hybiss_r1.ome.tiff

Files (30.0 GB)

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md5:f369990c2f2745aa5ee5426d4e76d572
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md5:766bf139f43714d39b848c2790fa8bf0
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md5:0cd789b1ca045a12be2d1ea42e4d0f66
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md5:ba2d278d982d7275e9a20865b6ab8be7
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md5:8b065da5923a14d5630912629f9f4153
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md5:081c41e80cb20c2b19b29c0138d7204c
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md5:08785b2fdd04d5ad07ebf7435b0f1a76
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Additional details

Related works

Is published in
Preprint: 10.1101/2024.02.01.578426 (DOI)

Software

Repository URL
https://github.com/weigertlab/spotiflow
Programming language
Python , C++
Development Status
Active

References

  • Eichenberger B., Zhan Y. (2020). Datasets. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12958037.v1
  • Zhang M., Eichhorn S.W., Zingg B. et al. Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH. Nature 598, 137–143 (2021).
  • Finn E.H., Pegoraro G., Brandão H.B., et al. Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization. Cell. 2019. doi: 10.1016/j.cell.2019.01.020.