apcamargo/genomad: geNomad v1.11.0

Added

• Add the --lenient-taxonomy and --full-ictv-lineage options to the annotate, find-proviruses, and end-to-end modules. The --lenient-taxonomy option enables assignment of genomes to taxa below the family rank (subfamily, genus, subgenus, and species). The --full-ictv-lineage option enables the output of the full ICTV lineage of each genome, including ranks that are hidden by default (subrealm, subkingdom, subphylum, subclass, suborder, subfamily, and subgenus).

Changed

• Remove the --conservative-taxonomy option of the annotate and end-to-end modules.