AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Published February 18, 2025 | Version v0.30.1

Software Open

Bugfix-only release.

Removed eqx.debug.nan, fixes #2629 by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2630
Fixes an SBML import issue that led to incorrect results for models with species-dependent initial assignments (fixes #2642) by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2643
Fixed CVodeGetSensDky error message by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2644
Disabled CvodeF checkpointing to prevent certain rare crashes when forward integration takes exactly maxsteps integration steps, plus some additional yet unclear condition. by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2645
Fixed rare crashes due to uncaught exceptions in ~FinalStateStorer by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2647

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.30.0...v0.30.1

Notes

If you use this software, please cite both the article from preferred-citation and the software itself.

Name	Size	Download all
AMICI-dev/AMICI-v0.30.1.zip md5:c6d189ccd06ee5ff53004ab9de0228ed	7.2 MB	Preview Download

Is supplement to: Software: https://github.com/AMICI-dev/AMICI/tree/v0.30.1 (URL)