nf-core

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Published February 18, 2025 | Version 3.5.1
Software Open

nf-core/sarek: 3.5.1 - Akkatjåkkå

Authors/Creators

  • 1. @seqeralabs
  • 2. Seqera
  • 3. Dep. of Molecular Medicine (MOMA)
  • 4. Fondazione Human Technopole
  • 5. Exscientia
  • 6. Boehringer Ingelheim
  • 7. University of Pavia
  • 8. Cosyne Therapeutics
  • 9. INCLIVA
  • 10. INSERM
  • 11. ZS Associates
  • 12. UW
  • 13. SciLifeLab
  • 14. @biosharp-dotnet
  • 15. Seqera Labs
  • 16. Washington University
  • 17. University of Tuebingen
  • 18. University College London
  • 19. NucleusGenomics | mynucleus.com
  • 20. ICR

Description

What's Changed

Changed

  • Bump schema version to 2.2.1 in https://github.com/nf-core/sarek/pull/1767 by @FriederikeHanssen
  • Merge intervals for WES in GATK GenomicsDBImport in https://github.com/nf-core/sarek/pull/1777 by @tdanhorn

Fixed

  • Use file-path-pattern over file-path to hanlde glob for known_indels and known_indels_tbi to fix https://github.com/nf-core/sarek/issues/1785 in https://github.com/nf-core/sarek/pull/1797 by @maxulysse
  • Update GHA for full_test tests in https://github.com/nf-core/sarek/pull/1802 by @maxulysse

Full Changelog: https://github.com/nf-core/sarek/compare/3.5.0...3.5.1

Files

nf-core/sarek-3.5.1.zip

Files (15.5 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/sarek/tree/3.5.1 (URL)

Software

Repository URL
https://github.com/nf-core/sarek