There is a newer version of the record available.

Published February 17, 2025 | Version 1.0.0
Software Open

nf-core/proteinfamilies: Iron Rhinoceros

Authors/Creators

  • 1. EMBL-EBI
  • 2. HKI Jena, MPI-EVA Leipzig

Description

Initial release of nf-core/proteinfamilies, created with the nf-core template.

Added

  • Amino acid sequence clustering (mmseqs)
  • Multiple sequence alignment (famsa, mafft, clipkit)
  • Hidden Markov Model generation (hmmer)
  • Between families redundancy removal (hmmer)
  • In-family sequence redundancy removal (mmseqs)
  • Family updating (hmmer, seqkit, mmseqs, famsa, mafft, clipkit)
  • Family statistics presentation (multiqc)

By @vagkaratzas and @mberacochea.

Files

nf-core/proteinfamilies-1.0.0.zip

Files (657.6 kB)

Name Size
md5:053a97a73a7362943e1d97952138dcf8
657.6 kB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/proteinfamilies/tree/1.0.0 (URL)

Software

Repository URL
https://github.com/nf-core/proteinfamilies