Code from: SIREs 3.0, AN IMPROVED RNA PREDICTION TOOL FOR IRON-RESPONSIVE ELEMENTS (IREs)

This repository contains code and scripts used in the following study:

SIREs 3.0, AN IMPROVED RNA PREDICTION TOOL FOR IRON-RESPONSIVE ELEMENTS (IREs)

Clara Suárez-Quintana1,2, Mar Navarro-Padilla3, Uciel Chorostecki2* and Mayka Sanchez3*

1 Department of Biomedicine, Iron metabolism: Regulation and Diseases Group. Universitat Internacional de Catalunya (UIC). Sant Cugat del Vallès, 08195, Spain.

2 Department of Biomedicine, Computational RNA Biology Group. Universitat Internacional de Catalunya (UIC). Sant Cugat del Vallès, 08195, Spain.

3 BloodGenetics S.L. Diagnostics in Inherited Blood Diseases. Esplugues de Llobregat, 08950, Spain.

This repository contains 2 directories:

• Code_for_figures/: contains R script and R objects to reproduce Fig1B-D and Fig S4A-B from the article
• Code_case_study/: contains R, python and bash scripts to reproduce the results from the Case Study of the article. A README.md file indicates the order and expected output of the scripts.