Published February 5, 2025 | Version 1.0.1

Syzygium jambos genome assembly and annotation

Description

De novo genome assembly and annotation of Syzygium jambos.

The following files are available:

  • sjam.fa.gz: reference genome sequence in fasta format
  • sjam.gff3.gz: gene annotation in GFF3 format
  • sjam.gtf.gz: gene annotation in GTF format
  • sjam.tx.fa.gz: transcript sequences in fasta format
  • sjam.cds.fa.gz: coding sequences in fasta format
  • sjam.prot.fa.gz: protein sequences in fasta format
  • sjam.tsv.gz: gene functional annotation in TSV format
  • sjam.chr_to_id.tsv.gz: mapping of sequence names to ids in TSV format

Files

Files (187.1 MB)

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md5:b7fb3e0c2ae04be7622bb2f086923b08
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md5:7388f1c5e9eda8a35c9fdd13a50e198a
131.1 MB Download
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md5:4501bbfa491a84f3fd3d0fd57af7a06b
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24.4 MB Download

Additional details

Related works

Is cited by
Journal article: 10.3389/fpls.2023.1248780 (DOI)