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Published February 3, 2025 | Version v0.2.1
Software Open

AlexsLemonade/OpenScPCA-analysis: v0.2.1

Authors/Creators

  • 1. @AlexsLemonade
  • 2. Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation
  • 3. St. Anna Children's Cancer Research Institute (CCRI)
  • 4. Alex's Lemonade Stand Foundation
  • 5. UT Southwestern
  • 6. MD Anderson Cancer Center
  • 7. UCL

Description

This release includes minor updates to the following modules:

  • cell-type-ewings
  • cell-type-consensus

In particular, the workflow for assigning consensus cell types has been created in the cell-type-consensus module. This workflow is now present in OpenScPCA-nf, and results will be made available to all contributors.

New FAQs covering how to work with ScPCA data as Seurat objects and using gene symbols instead of Ensembl IDs have been added to the OpenScPCA documentation.

Rcpp package versions within modules were updated for compatibility.

Files

AlexsLemonade/OpenScPCA-analysis-v0.2.1.zip

Files (1.3 GB)

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md5:43aeaa9767b2a63da90a05d79d8d30d1
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Additional details

Related works

Is supplement to
Software: https://github.com/AlexsLemonade/OpenScPCA-analysis/tree/v0.2.1 (URL)

Software

Repository URL
https://github.com/AlexsLemonade/OpenScPCA-analysis