globalbioticinteractions/globalbioticinteractions: v0.27.6

Features

n/a

Improvements

• improved body part mappings as provided by @mdrishti (thank you!) https://github.com/globalbioticinteractions/globalbioticinteractions/issues/1031 .
• towards supporting discoverlife in rendering GloBI search results; re… …lated to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/1038
• make default interaction type mappings visible in provenance graphs: make interaction type mappings explicit by shipping them along with the dependency manifest (related to https://github.com/globalbioticinteractions/elton/issues/61)

example

elton update --prov-mode globalbioticinteractions/template-dataset | grep csv | grep hasVersion

results in:

<classpath:/org/globalbioticinteractions/interaction_types_ignored.csv> <http://purl.org/pav/hasVersion> <hash://sha256/f49f665c540214e7d00466e359821de1bc03206f8373d4974220d608ed7b98f3> <urn:uuid:1d66567d-ea58-4b05-b167-42cbf054f5bb> .
<classpath:/org/globalbioticinteractions/interaction_types_mapping.csv> <http://purl.org/pav/hasVersion> <hash://sha256/ef045408607c6fb19d6bdf8145e7ce16a0e16bc8be45acbe31da33e1db0c9ea7> <urn:uuid:1d66567d-ea58-4b05-b167-42cbf054f5bb> .
<classpath:/org/globalbioticinteractions/interaction_types_ro_unmapped.csv> <http://purl.org/pav/hasVersion> <hash://sha256/43aba7b90c686a4890aebd4a90a02d6f82259664524bdad1b22102a29fe9fa07> <urn:uuid:1d66567d-ea58-4b05-b167-42cbf054f5bb> .
<classpath:/org/globalbioticinteractions/interaction_types_ro.csv> <http://purl.org/pav/hasVersion> <hash://sha256/7dc2797003a95ac7b97be06fda48b4dc25e7a555a2839a19ad7dc7a148427e43> <urn:uuid:1d66567d-ea58-4b05-b167-42cbf054f5bb> .

where hash://sha256/ef045408607c6fb19d6bdf8145e7ce16a0e16bc8be45acbe31da33e1db0c9ea7 is the content id/hash of one of the default mappings shipped with Elton -

with

preston cat --remote https://linker.bio hash://sha256/ef045408607c6fb19d6bdf8145e7ce16a0e16bc8be45acbe31da33e1db0c9ea7\
 | head\
 | mlr --icsv --omd cat\
 | head

resulting in:

| provided_interaction_type_label | provided_interaction_type_id | mapped_to_interaction_type_label | mapped_to_interaction_type_id | | --- | --- | --- | --- | | associated with | | interactsWith | http://purl.obolibrary.org/obo/RO_0002437 | | plant associations | | interactsWith | http://purl.obolibrary.org/obo/RO_0002437 | | | | interactsWith | http://purl.obolibrary.org/obo/RO_0002437 | | ex | | hasHost | http://purl.obolibrary.org/obo/RO_0002454 | | ex. | | hasHost | http://purl.obolibrary.org/obo/RO_0002454 | | reared ex | | hasHost | http://purl.obolibrary.org/obo/RO_0002454 | | reared ex. | | hasHost | http://purl.obolibrary.org/obo/RO_0002454 | | host to | | hostOf | http://purl.obolibrary.org/obo/RO_0002453 | | host | | hasHost | http://purl.obolibrary.org/obo/RO_0002454 |

Bugs