Published January 30, 2025 | Version v1
Dataset Open

Dataset from InCell 2200 microscope misread as a plate

  • 1. ROR icon École Polytechnique Fédérale de Lausanne

Description

Two dummy datasets are provided in this repository : 

  • Dataset_Ok : 96 wells, 9 fields of view per well, 4 different channels (DAPI, Cy3, FITC, Brightfield), no Z, no T. The .xcde file of this dataset is correctly read by BioFormats, as the dataset is recognized as a plate, and can be imported on OMERO
  • Dataset_fail: 20 wells, 4 fields of view per well, 5 channels, with one duplicate (DAPI, FITC, Cy3, Cy5 wix 4 , Cy5 wix 5), no Z, no T. The .xcde file of this dataset is not correctly read by BioFormats and no images are imported on OMERO.

BioFormats version: 8.0.1

A discussion thread has been open on this topic.

Files

Dataset_Fail.zip

Files (5.8 GB)

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