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Published January 27, 2025 | Version 3.2.0
Software Open

The nf-core framework for community-curated bioinformatics pipelines.

Authors/Creators

Description

v3.2.0 - Pewter Pangolin - [2025-01-27]

Highlights

  • Local modules and subworkflows now use a template with a tests/ directory, similar to the components created for the nf-core/modules.
  • We fixed the permission error bug when running nf-core pipelines with the Nextflow version 24.12.0-edge.
  • We removed the automated pipeline release tweets. There are still automated Mastodon and Bluesky posts.

Template

  • Remove automated release tweets (#3419)
  • Update template components (#3426)
  • Fix process.shell in nextflow.config (#3416) and split into new lines (#3425)

Modules

  • Modules created in pipelines "local" dir now use the full template (#3256)

Subworkflows

  • Subworkflows created in pipelines "local" dir now use the full template (#3256)

General

  • Update pre-commit hook editorconfig-checker/editorconfig-checker.python to v3.1.2 (#3414)
  • Update python:3.12-slim Docker digest to 123be56 (#3421)

Notes

If you use `nf-core tools` in your work, please cite the `nf-core` publication

Files

nf-core/tools-3.2.0.zip

Files (953.5 kB)

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md5:0f28511245c03e749986f0adf81f5d86
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/tools/tree/3.2.0 (URL)

Software

Repository URL
https://github.com/nf-core/tools