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Published January 27, 2025 | Version v1
Dataset Open

Analysis Data and Stardist3D Trained Weights for Whole-mount Gastruloid Deep Imaging and Multiscale Analysis

Creators

  • 1. ROR icon Institut de Biologie du Développement Marseille
  • 2. ROR icon Institut de Mathématiques de Marseille
  • 3. EDMO icon Aix-Marseille University
  • 4. ROR icon Aix-Marseille Université
  • 5. ROR icon Délégation Provence et Corse

Description

This archive is associated to the publication
"
Gros, A., Vanaret, J., Dunsing-Eichenauer, V., Rostan, A., Roudot, P., Lenne, P.F., Guignard, L. and Tlili, S., 2024. A quantitative pipeline for whole-mount deep imaging and multiscale analysis of gastruloids. bioRxiv, pp.2024-08
"
with DOI https://doi.org/10.1101/2024.08.13.607832 

It contains the following zip files:
    - "zenodo_tapenade_data.zip" which contains all datasets used to reproduce the figures of the articles, the trained Stardist3D weights, and the associated training datasets.
    - "stardist_tapenade_model.zip" which contains the trained Stardist3D weights

 

Files

readme_zenodo.txt

Files (9.4 GB)

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md5:80a477f916b66c8af43ea18b77b1c0df
626 Bytes Preview Download
md5:65f16f679d4ff05b4e0d4311b06c6aec
12.6 MB Preview Download
md5:f9aeb61f0106aa48f966a77c24b483b7
9.4 GB Preview Download

Additional details

Related works

Is published in
Publication: 10.1101/2024.08.13.607832 (DOI)

Funding

Agence Nationale de la Recherche
ANR-16-CONV-0001
Agence Nationale de la Recherche
ANR-19-CE13-0022
Fondation pour la Recherche Médicale
EQU202003010407
Agence Nationale de la Recherche
ANR-22-CE30-0021
European Commission
BREAKDANCE - Control mechanisms and robustness of multicellular symmetry breaking 101072123
International Human Frontier Science Program Organization
HFSP LT0058/2022- L

Software

Repository URL
https://github.com/jules-vanaret/paper_tapenade
Programming language
Python