nf-core/pixelator: nf-core/pixelator v1.4.0

What's Changed

• Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in https://github.com/nf-core/pixelator/pull/111
• Add graph refinement options for pixelator 0.19 by @fbdtemme in https://github.com/nf-core/pixelator/pull/112
• Fix validation issues after nf-core/tools v3 template update by @fbdtemme in https://github.com/nf-core/pixelator/pull/113
• Remove --save_recovered_components options for graph outputs by @fbdtemme in https://github.com/nf-core/pixelator/pull/114
• Update containers for 0.19.0 by @fbdtemme in https://github.com/nf-core/pixelator/pull/115
• Bump version for 1.4 release by @fbdtemme in https://github.com/nf-core/pixelator/pull/116
• Important! Template update for nf-core/tools v3.1.0 by @nf-core-bot in https://github.com/nf-core/pixelator/pull/117
• Update metromap, bump conda versions by @fbdtemme in https://github.com/nf-core/pixelator/pull/118
• Add process_long labels to AMPLICON and COLLAPSE by @fbdtemme in https://github.com/nf-core/pixelator/pull/120
• Important! Template update for nf-core/tools v3.1.1 by @mirpedrol in https://github.com/nf-core/pixelator/pull/122
• Add manifest.contributors metadata to nextflow.config by @fbdtemme in https://github.com/nf-core/pixelator/pull/124
• Use environment.yml files for all conda process directives by @fbdtemme in https://github.com/nf-core/pixelator/pull/125
• Add nf-test tests for local modules and subworkflows by @fbdtemme in https://github.com/nf-core/pixelator/pull/123
• Release 1.4 by @fbdtemme in https://github.com/nf-core/pixelator/pull/121

Parameters

| Old parameter | New parameter | | ------------------------------------ | ---------------------------------------- | | | --help_full | | | --show_hidden | | --validationFailUnrecognisedParams | | | --validationLenientMode | | | --validationSchemaIgnoreParams | | | --validationShowHiddenParams | | | --leiden_iterations | --graph_max_refinement_recursion_depth | | | --graph_max_edges_to_split | | | --graph_max_edges_to_split | | --save_recovered_components | |

[!NOTE] Parameter has been updated if both old and new parameter information is present. Parameter has been added if just the new parameter information is present. Parameter has been removed if new parameter information isn't present.

Software dependencies

| Dependency | Old version | New version | | ----------- | ----------- | ----------- | | pixelator | 0.18.2 | 0.19.0 |

[!NOTE] Dependency has been updated if both old and new parameter information is present. Dependency has been added if just the new parameter information is present. Dependency has been removed if new parameter information isn't present.

New Contributors

• @mirpedrol made their first contribution in https://github.com/nf-core/pixelator/pull/122

Full Changelog: https://github.com/nf-core/pixelator/compare/1.3.1...1.4.0