There is a newer version of the record available.

Published January 20, 2025 | Version v0.1.7
Software Open

scverse/spatialdata-io: v0.1.7

Authors/Creators

  • 1. @theislab
  • 2. European Molecular Biology Laboratory
  • 3. Cure51 and Gustave Roussy Institute
  • 4. Universiteit Gent
  • 5. University Heidelberg @SchapiroLabor
  • 6. Wellcome Sanger Institute
  • 7. Iber Lab - ETH Zürich
  • 8. Institute for Computational Biomedicine
  • 9. Boehringer Ingelheim
  • 10. University of Warsaw, Faculty of Mathematics, Informatics, and Mechanics
  • 11. Institute of Pathology, Technical University Munich

Description

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed

Major

  • MACSima: add reader by @berombau in https://github.com/scverse/spatialdata-io/pull/224
  • Add CLI for spatialdata_io. by @migueLib in https://github.com/scverse/spatialdata-io/pull/239

Minor

  • new test datasets by @LucaMarconato in https://github.com/scverse/spatialdata-io/pull/248
  • Visium HD: represent bins as labels by @ArneDefauw in https://github.com/scverse/spatialdata-io/pull/211
  • Xenium: update xenium.py, fix problem with hidden files in morphology_foucs directory by @psl-schaefer in https://github.com/scverse/spatialdata-io/pull/260
  • Visium HD: handle IF images by @quentinblampey in https://github.com/scverse/spatialdata-io/pull/261

Changed

  • seqFISH: update seqfish reader by @LLehner in https://github.com/scverse/spatialdata-io/pull/227

Fixed

  • VisiumHD: detect full-res image when path is relative by @quentinblampey in https://github.com/scverse/spatialdata-io/pull/230
  • MERSCOPE: reader remove invalid polygons by @ckmah in https://github.com/scverse/spatialdata-io/pull/207
  • Steinbock: fix naming constraints by @LucaMarconato in https://github.com/scverse/spatialdata-io/pull/265

New Contributors

  • @berombau made their first contribution in https://github.com/scverse/spatialdata-io/pull/224
  • @ArneDefauw made their first contribution in https://github.com/scverse/spatialdata-io/pull/211
  • @ckmah made their first contribution in https://github.com/scverse/spatialdata-io/pull/207
  • @migueLib made their first contribution in https://github.com/scverse/spatialdata-io/pull/239
  • @psl-schaefer made their first contribution in https://github.com/scverse/spatialdata-io/pull/260

Full Changelog: https://github.com/scverse/spatialdata-io/compare/v0.1.6...v0.1.7

Files

scverse/spatialdata-io-v0.1.7.zip

Files (111.8 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/scverse/spatialdata-io/tree/v0.1.7 (URL)

Software

Repository URL
https://github.com/scverse/spatialdata-io