Published January 20, 2025
| Version v1.0.0
Software
Open
nch-igm/VarRNA: Initial release - v1.0.0
Description
This is the first release of VarRNA, which accompanies the manuscript submission titled "Variant calling from RNA-Seq data reveals allele-specific differential expression of pathogenic cancer variants". Features include:
- RNA-Seq data processing (STAR alignment, GATK variant calling);
- Feature annotation with ANNOVAR; and
- Our model to classify variants as germline, somatic, or artifact.
Files
nch-igm/VarRNA-v1.0.0.zip
Files
(866.6 kB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/nch-igm/VarRNA/tree/v1.0.0 (URL)
Software
- Repository URL
- https://github.com/nch-igm/VarRNA