Published January 20, 2025 | Version v1.0.0
Software Open

nch-igm/VarRNA: Initial release - v1.0.0

Authors/Creators

  • 1. Nationwide Children's Hospital

Description

This is the first release of VarRNA, which accompanies the manuscript submission titled "Variant calling from RNA-Seq data reveals allele-specific differential expression of pathogenic cancer variants". Features include:

  • RNA-Seq data processing (STAR alignment, GATK variant calling);
  • Feature annotation with ANNOVAR; and
  • Our model to classify variants as germline, somatic, or artifact.

Files

nch-igm/VarRNA-v1.0.0.zip

Files (866.6 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/nch-igm/VarRNA/tree/v1.0.0 (URL)

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