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Published January 9, 2025 | Version v3.0.0
Software Open

zarr-developers/zarr-python: v3.0.0

  • 1. Wellcome Sanger Institute
  • 2. @earth-mover
  • 3. CEA
  • 4. @Quansight-Labs
  • 5. UCL
  • 6. @openmicroscopy @German-BioImaging
  • 7. Independent software engineer
  • 8. @scalableminds
  • 9. @zarr-developers
  • 10. @coiled
  • 11. Quansight
  • 12. Earthmover PBC
  • 13. NVIDIA
  • 14. scalableminds
  • 15. Maven Securities
  • 16. @UCL-ARC, @UCL
  • 17. @developmentseed
  • 18. Monash eResearch Centre, Monash University
  • 19. Anaconda, inc.
  • 20. Satelligence
  • 21. GFDL

Description

What's Changed

  • Disable pre-commit.ci's PR autofixes by @jakirkham in https://github.com/zarr-developers/zarr-python/pull/1506
  • Bump redis from 4.5.5 to 4.6.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1446
  • Bump ipywidgets from 8.0.7 to 8.1.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1510
  • Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1520
  • Tiny tweak: Extend copyright notice to 2023 by @JackKelly in https://github.com/zarr-developers/zarr-python/pull/1528
  • Bump pytest from 7.3.2 to 7.4.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1445
  • Allow black to be run on any Python version by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1549
  • Unnecessary list literal → set literal by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1534
  • Minor edits in docs by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1509
  • Preserve dimension separator metadata when resizing arrays by @ziw-liu in https://github.com/zarr-developers/zarr-python/pull/1540
  • io.open → open by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1421
  • Bump pymongo from 4.4.0 to 4.5.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1507
  • Fix typo newly found by codespell by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1554
  • Bump actions/setup-python from 4.6.0 to 4.7.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1541
  • Bump pytest-doctestplus from 0.13.0 to 1.0.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1512
  • Bump fasteners from 0.18 to 0.19 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1553
  • Add links to numcodecs docs in tutorial by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1535
  • Fail doc build on warnings by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1548
  • DOC: Enable offline formats by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1560
  • Remove dependency by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1563
  • Bump setuptools-scm from 7.1.0 to 8.0.4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1562
  • Bump redis from 4.6.0 to 5.0.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1561
  • Update release.rst by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1574
  • Automatically document Array members by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1547
  • DOC: Minor tweak to advanced indexing example in tutorial by @rossbar in https://github.com/zarr-developers/zarr-python/pull/1550
  • Bump h5py from 3.9.0 to 3.10.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1571
  • Bump fsspec from 2023.6.0 to 2023.10.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1570
  • Bump pytest-timeout from 2.1.0 to 2.2.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1577
  • Bump pytest from 7.4.0 to 7.4.3 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1576
  • Bump conda-incubator/setup-miniconda from 2.2.0 to 2.3.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1575
  • Remove CODE_OF_CONDCUT.md file from the Zarr-Python repo by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1572
  • Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1586
  • Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1587
  • Bootstrap v3 branch with zarrita by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1584
  • Cache result of FSStore._fsspec_installed() by @ph03 in https://github.com/zarr-developers/zarr-python/pull/1581
  • Extensible codecs for V3 by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1588
  • Bump version of black in pre-commit by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1559
  • Use list comprehension where applicable by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1555
  • Bump numcodecs from 0.11.0 to 0.12.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1580
  • Use format specification mini-language to format string by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1558
  • Single startswith() call instead of multiple ones by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1556
  • Bump pymongo from 4.5.0 to 4.6.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1585
  • Move codespell options around by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1196
  • Bump fsspec from 2023.10.0 to 2023.12.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1600
  • Add type hints to zarr.create by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1536
  • Remove unused mypy ignore comments by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1602
  • Bump actions/setup-python from 4.7.1 to 5.0.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1605
  • Bump github/codeql-action from 2 to 3 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1609
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1448
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1618
  • Bump fsspec from 2023.12.1 to 2023.12.2 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1606
  • Bump pytest-doctestplus from 1.0.0 to 1.1.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1619
  • Bump pytest from 7.4.3 to 7.4.4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1622
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1626
  • Create TEAM.md by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1628
  • Drop python 3.8 and numpy 1.20 by @joshmoore in https://github.com/zarr-developers/zarr-python/pull/1557
  • Add Norman Rzepka to core-dev team by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1630
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1633
  • Bump actions/download-artifact from 3 to 4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1611
  • Update tutorial.rst to include section about accessing Zip Files on S3 by @jeffpeck10x in https://github.com/zarr-developers/zarr-python/pull/1615
  • doc(v3): add v3 roadmap and design document by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1583
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1636
  • Don't import from tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1601
  • [V3] Update minimum supported Python and Numpy versions by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1638
  • use src layout and use hatch for packaging by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1592
  • temporarily disable mypy in v3 directory by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1649
  • create hatch test env by @rabernat in https://github.com/zarr-developers/zarr-python/pull/1650
  • removed unused environments and workflows by @rabernat in https://github.com/zarr-developers/zarr-python/pull/1651
  • Listable V3 Stores by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1634
  • Codecs without array metadata by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1632
  • Add env variables to sprint setup instructions by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/1654
  • fix sync group class methods by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1652
  • Specify docs hatch env for v3 branch by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/1655
  • Add test matrix for V3 by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/1656
  • Pyodide support: don't require fasteners on emscripten by @hoodmane in https://github.com/zarr-developers/zarr-python/pull/1663
  • Update release.rst by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1621
  • Bump numpy from 1.24.3 to 1.26.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1543
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1642
  • Bump ipywidgets from 8.1.0 to 8.1.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1538
  • Proper argument for numpy.reshape by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1425
  • Bump ipywidgets from 8.1.1 to 8.1.2 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1666
  • docs: ZIP-related tweaks by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1641
  • Bump numpy from 1.26.1 to 1.26.4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1669
  • Change occurrences of % and format() to f-strings by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1423
  • Remove attrs by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1660
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1672
  • Bump pymongo from 4.6.1 to 4.6.2 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1674
  • Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1677
  • Add typing to dimension separator arguments by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1620
  • Replace Gitter with new Zulip Chat link by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1685
  • Bump redis from 5.0.1 to 5.0.2 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1688
  • Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.12 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1691
  • Bump pytest-doctestplus from 1.1.0 to 1.2.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1693
  • Fix RTD build by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1694
  • Update release.rst for v2.17.1 by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1673
  • Bump pytest-timeout from 2.2.0 to 2.3.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1697
  • Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1690
  • docs(tutorial.rst): fix link to GCSMap by @DahnJ in https://github.com/zarr-developers/zarr-python/pull/1689
  • Update installation.rst stating version support policy by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1665
  • Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.8.14 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1700
  • Bump pytest-doctestplus from 1.2.0 to 1.2.1 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1699
  • Bump redis from 5.0.2 to 5.0.3 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1698
  • Add Python 3.12 to CI by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1719
  • Bump pytest-cov from 4.1.0 to 5.0.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1722
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1708
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1723
  • Fix release notes (following #1719) by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1725
  • Override ipython repr methods. by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1724
  • Bump pymongo from 4.6.2 to 4.6.3 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1729
  • Remove v1 and v2 specification by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1582
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1738
  • Optimize Array.info and Group.info by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1733
  • Bump actions/setup-python from 5.0.0 to 5.1.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1736
  • Couple fixes by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1737
  • Fix tests with Pytest 8 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1714
  • Avoid redundant contains by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1739
  • Array & Group: Use already loaded attributes to populate cache. by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1734
  • Optimize attribute setting by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1741
  • Make sure fs exceptions are raised if not MissingFs exceptions (clone) by @itcarroll in https://github.com/zarr-developers/zarr-python/pull/1604
  • chore(release): update changelog for 2.17.2 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1775
  • Resolve Mypy erorrs in v3 branch by @DahnJ in https://github.com/zarr-developers/zarr-python/pull/1692
  • chore(docs): reset release notes as unreleased by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1776
  • Specify hatch envs using GitHub actions matrix for v3 tests by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/1728
  • black -> ruff format + cleanup by @Saransh-cpp in https://github.com/zarr-developers/zarr-python/pull/1639
  • Development installation/contributing docs updates by @aldenks in https://github.com/zarr-developers/zarr-python/pull/1643
  • Allow dmypy to be run on v3 branch by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1780
  • Remove unused typing ignore comments by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1781
  • Check untyped defs on v3 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1784
  • [v3] Enable some more strict mypy options by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1793
  • implement eq for LocalStore by @Charoula-Kyriakides in https://github.com/zarr-developers/zarr-python/pull/1792
  • Remove old v3 by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1742
  • Bump codecov/codecov-action from 3 to 4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1647
  • [v3] Disallow generic Any typing by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1794
  • Update release.rst for v2.17.2 by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1778
  • Deprecate the experimental v3 implementation by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1802
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1779
  • Fix is_total_slice for size-1 dimensions by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1800
  • V3 update pre commit by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1808
  • V3 reorg by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1809
  • [v3] Sync with futures by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1804
  • implement group.members by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1726
  • remove windows testing on v3 branch by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1817
  • add note to the top of the release page noting the plan for 2.18.* and 3.0 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1816
  • Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1824
  • dep(docs): deprecate experimental v3 support in docs by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1807
  • Disallow incomplete type definitions by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1814
  • fix: add mypy to test dependencies by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1789
  • Bump h5py from 3.10.0 to 3.11.0 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1786
  • Bump redis from 5.0.3 to 5.0.4 by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1810
  • Disallow untyped calls by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1811
  • chore(ci): add numpy 2 release candidate to test matrix by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1828
  • deprecate(stores): add deprecation warnings to stores that we plan to remove in v3 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1801
  • fix dependencies by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1840
  • use np.inf instead of PINF/NINF by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1842
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1825
  • Add pytest to mypy dependencies by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1846
  • Enable ruff/bugbear rules (B) and fix issues by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1702
  • chore(pre-commit): update pre-commit versions and remove attrs dep mypy section by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1848
  • Remove implicit groups by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1827
  • feature(store): list_* -> AsyncGenerators by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1844
  • Release notes for 2.18.0 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1843
  • Update release.rst by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1850
  • Test codec entrypoints by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1835
  • Remove extra v3 sync module by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/1856
  • Use donfig for V3 configuration by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/1855
  • Fix any generics in zarr.array by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1861
  • Fix some untyped calls by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1865
  • chore: update project settings per scientific python repo-review by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1863
  • Group dependabot updates by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1854
  • Disallow untyped defs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1834
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1876
  • Enable some ruff rules (RUF) and fix issues by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1869
  • groundwork for V3 group tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1743
  • Add more typing to zarr.group by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1870
  • [v3] First step to generalizes ndarray and bytes by @madsbk in https://github.com/zarr-developers/zarr-python/pull/1826
  • Fix a regression with scalar indexing due to #1800 by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1875
  • release notes for 2.18.1 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1885
  • Reworked codec pipelines by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1670
  • Configure Ruff to apply flake8-bugbear/isort/pyupgrade by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1890
  • reset release notes by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1886
  • chore(ci): remove mypy from test action in favor of pre-commit action by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1887
  • Enable ruff/flake8-raise rules (RSE) and fix issues by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1872
  • Apply assorted ruff/refurb rules (FURB) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1873
  • Enable ruff/flake8-implicit-str-concat rules (ISC) and fix issues by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1868
  • Remove some unused mypy overrides by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1894
  • Finish typing zarr.metadata by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1880
  • Followup on codecs by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1889
  • Add numpy to mypy pre-commit check env by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1893
  • remove fixture files from src by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1897
  • Protocols for Buffer and NDBuffer by @madsbk in https://github.com/zarr-developers/zarr-python/pull/1899
  • Add zstd to old V3 supported codecs by @rabernat in https://github.com/zarr-developers/zarr-python/pull/1914
  • doc: update release notes for 2.18.2 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1915
  • [V3] Expand store tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1900
  • [v3] Feature: Store open mode by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1911
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1920
  • Disallow implicit re-exports by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1908
  • Make typing strict by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1879
  • Enable extra mypy error codes by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1909
  • fix(types): Group.info -> NotImplementedError by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1936
  • Enable warn_unreachable for mypy by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1937
  • Run sphinx directly on readthedocs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1919
  • Fix list of packages in mypy pre-commit environment by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1907
  • Bump the actions group with 6 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1904
  • Fix final typing errors by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1939
  • feature(typing): add py.typed file to package root by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1935
  • Apply preview ruff rules by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1942
  • Enable and apply ruff rule RUF009 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1941
  • Support all indexing variants by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1917
  • Feature: group and array name properties by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1940
  • implement .chunks on v3 arrays by @rabernat in https://github.com/zarr-developers/zarr-python/pull/1929
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1948
  • Fixes bug in transpose by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1949
  • Buffer Prototype Argument by @madsbk in https://github.com/zarr-developers/zarr-python/pull/1910
  • Feature: Top level V3 API by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1884
  • Basic working FsspecStore by @martindurant in https://github.com/zarr-developers/zarr-python/pull/1785
  • doc: update release notes for 3.0.0.alpha by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1959
  • Update release.rst by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/1960
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1957
  • Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/1969
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1973
  • [v3] add json indentation to config by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1952
  • Clean up typing and docs for indexing by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/1961
  • parse_shapelike allows 0 by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1979
  • 0 dim arrays: indexing by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1980
  • [v3] Elevate codec pipeline by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1932
  • Update RemoteStore.__str__ and add UPath tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1964
  • Automatically generate API reference docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1918
  • Fix doc build warnings by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1985
  • Fix doc build by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1987
  • [v3] Buffer ensure correct subclass based on the BufferPrototype argument by @madsbk in https://github.com/zarr-developers/zarr-python/pull/1974
  • Allow 'chunks' as an alias for 'chunk_shape' in array creation by @tomwhite in https://github.com/zarr-developers/zarr-python/pull/1991
  • Use f-strings instead of legacy interpolation by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1995
  • Unnecessary use of a comprehension by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1994
  • Handle Path in make_store_path by @tomwhite in https://github.com/zarr-developers/zarr-python/pull/1992
  • Unnecessary comprehension by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1996
  • Merge collapsible if statements by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1999
  • Stop ignoring these ruff rules by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2001
  • Unnecessary comprehension by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1997
  • Fix string interpolation by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/1998
  • Fix indexing with bools by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/1968
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/1989
  • Bump NumPy to 2.0 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/1983
  • build(ci): enable python 3.12 in github actions by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2005
  • doc: copy 3.0.0.alpha changelog into release.rst by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2007
  • make shardingcodec pickleable by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2011
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2017
  • Cast fill value to array's dtype by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2020
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2039
  • Redundant list comprehension by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2048
  • Multiple imports for an import name by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2047
  • Move fixtures to tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/1813
  • Apply ruff/flake8-bandit rule B006 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2049
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2051
  • [v2 / v3 compat] add Group.array and data kwarg to array creation by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2042
  • fix file modes by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2000
  • Use config to select implementation by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/1982
  • Handle missing attributes key from metadata, and other fixes by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2058
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2057
  • Add hypothesis property tests by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1746
  • Fix low contrast in dark theme h3 headings by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2003
  • Updated test dependencies in pyproject.toml by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2069
  • Remove zstandard dependency in favor of numcodecs by @normanrz in https://github.com/zarr-developers/zarr-python/pull/1838
  • Update TEAM.md by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2071
  • Enforce ruff/tryceratops rules (TRY) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2054
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2080
  • [v2] Fix doctests with numpy 2.0 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2073
  • Fix version number in built docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2044
  • [v3] reorganize package - move most modules to zarr.core by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2072
  • Fix orthogonal indexing with a scalar by @dcherian in https://github.com/zarr-developers/zarr-python/pull/1947
  • Re-enable dependabot on main branch by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2082
  • Stateful store tests by @e-marshall in https://github.com/zarr-developers/zarr-python/pull/2070
  • Bump the requirements group across 1 directory with 7 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2092
  • Bump the actions group with 2 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2087
  • [v2] Drop support for Python 3.9 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2074
  • Fix Array.array for numpy 2.1 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2106
  • Bump test version of numcodecs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2114
  • fix: numpy 1.24 compat for Array.array by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2123
  • Fixed MemoryStore.list_dir by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2117
  • Deprecate N5Store by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2103
  • Run tests on numpy 1.23 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2124
  • Bump the requirements group across 1 directory with 3 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2129
  • chore: bump minimum numpy version to 1.24 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2127
  • Feature/recursive members by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2118
  • Remove un-needed package installs in CI by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2095
  • Fix dtype type error by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2136
  • mypy fixes for NumPy 2.1.0 by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2139
  • Initial GPU support by @akshaysubr in https://github.com/zarr-developers/zarr-python/pull/1967
  • [v3] clean up create_array signatures in group/asyncgroup classes by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2132
  • Bump the actions group with 2 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2146
  • Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2147
  • Bump ruff version by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2148
  • Bump numpy from 2.1.0 to 2.1.1 in the requirements group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2151
  • [v3] h5py compat methods on Group by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2128
  • chore(docs): update release notes ahead of 2.18.4 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2152
  • Enforce Repo-Review rules by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2075
  • Enforce ruff/flake8-type-checking rules (TCH) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2110
  • Add UPath dependency/type checking by @dstansby in https://github.com/zarr-developers/zarr-python/pull/1955
  • Check tests folder with mypy by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2150
  • Fix new ruff/flake8-type-checking TCH003 error by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2154
  • Autogenerate all API docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2002
  • Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2161
  • Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2160
  • Ensure that store_dict used for empty dicts by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2162
  • [docs] remove primary sidebar from tutorial by @sneakers-the-rat in https://github.com/zarr-developers/zarr-python/pull/2142
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2165
  • Fixed test warnings by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2168
  • Fixed path segment duplication in open_array by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2167
  • Simplify mypy config for tests by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2156
  • Bump pytest from 8.3.2 to 8.3.3 in the requirements group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2172
  • Accept dictionaries for store argument by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2164
  • refactor: split metadata into v2 and v3 modules by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2163
  • More typing fixes for tests by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2173
  • feature(store): V3 ZipStore by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2078
  • test: check that store, array, and group classes are serializable by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2006
  • fix: opening a group with unspecified format finds either v2 or v3 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2183
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2188
  • fix: replace tests that went missing in #2006 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2192
  • Silence hypothesis complex warning by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2157
  • Narrow JSON type, ensure that to_dict always returns a dict, and v2 filter / compressor parsing by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2179
  • Fixed codec for v2 data with no fill value by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2207
  • implement store.list_prefix and store._set_many by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2064
  • [v3] Implement Group methods for empty, full, ones, and zeros by @lindseynield in https://github.com/zarr-developers/zarr-python/pull/2210
  • Make MemoryStore serializable by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2204
  • Default to RemoteStore for fsspec URIs by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2198
  • Typing fixes for test_indexing by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2193
  • Make Group.arrays, groups compatible with v2 by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2213
  • Basic Zarr-python 2.x compatibility changes by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2098
  • fix typo in store integration test by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2223
  • fix: validate v3 dtypes when loading/creating v3 metadata by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2209
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2222
  • Added Attributes.asdict by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2221
  • Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2219
  • Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2220
  • Fix/empty listdir by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2225
  • remove outdated v2 source code and tests from v3 branch by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2182
  • fix: selection with zarr arrays by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2137
  • Adding Deepak and Tom to the core team by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2227
  • Apply and enforce more ruff rules by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2053
  • Update V2 codec pipeline to use concrete classes by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2244
  • Fix fill_value handling for complex dtypes by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2200
  • Enforce ruff/flynt rules (FLY) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2240
  • Enforce ruff/flake8-return rules (RET) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2237
  • Fix multiple identical imports by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2241
  • Enforce ruff/flake8-pytest-style rules (PT) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2236
  • Replace Gitter link with Zulip by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/2254
  • Use map(str, *) in test_accessed_chunks by @jakirkham in https://github.com/zarr-developers/zarr-python/pull/2229
  • Enforce ruff/flake8-comprehensions rules (C4) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2239
  • Remove unnecessary lambda expression by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2260
  • No need to run DeepSource any more - we use ruff by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2261
  • Apply ruff/flake8-annotations rule ANN204 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2258
  • Add array storage helpers by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2065
  • Apply assorted ruff/flake8-simplify rules (SIM) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2259
  • feature(store): add LoggingStore wrapper by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2231
  • chore(deps): drop support for python 3.10 and numpy 1.24 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2217
  • fix(async): set default concurrency to 10 tasks by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2256
  • feat: metadata-only support for storage transformers metadata by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2180
  • Default zarr.open to open_group if shape is not provided by @agoodm in https://github.com/zarr-developers/zarr-python/pull/2158
  • Generalize stateful store test by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2202
  • Enforce ruff/flake8-annotations rules (ANN) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2264
  • Added a new issue template for documentation issues by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/2255
  • Apply new ruff rules (preview mode) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2235
  • Ensure parents are created when creating a node by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2262
  • Allow mode casting for Stores by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2249
  • Bump verison of autoapi used to build docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2177
  • Bump the actions group across 1 directory with 2 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2257
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2277
  • [v3] fix: zarr v2 compatibility fixes for Dask by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2186
  • Bump the requirements group across 1 directory with 3 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2284
  • Fix low contrast box titles by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2287
  • Bump pymongo from 4.10.0 to 4.10.1 in the requirements group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2288
  • Backport #2287 to main by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2292
  • Ignore extra keys in v2 metadata by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2297
  • Remove acknowledgements page from docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2293
  • Add maximum character length for signatures in docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2299
  • Change ArrayV3Metadata.data_type to DataType by @rabernat in https://github.com/zarr-developers/zarr-python/pull/2278
  • Add BaseCodec to the docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2290
  • Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2305
  • Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2304
  • fix: array creation prototype by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2306
  • base64 encode fill value for some dtypes with zarr_format=2 by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2286
  • Bump the requirements group with 2 updates by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2303
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2307
  • Add string and bytes dtypes plus vlen-utf8 and vlen-bytes codecs by @rabernat in https://github.com/zarr-developers/zarr-python/pull/2036
  • fix: add get(key, default) method to Group APIs by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2311
  • fix(storage): change StoreTests get/set methods to async by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2313
  • fix(store): speed up Store.open by avoiding empty/clear calls unless needed by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2314
  • Keyword argument defined before variable positional arguments by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2321
  • Assigning the same variable to itself by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2320
  • Apply ruff rules (RUF) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2319
  • Unnecessary lambda expression by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2318
  • Add some numpydoc validation checks by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2316
  • Use implicit fill values for zarr v2 by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2274
  • zarr.open should fall back to opening a group by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2310
  • Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2326
  • Refactor/rename v2 metadata fields by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2301
  • Zarr-v3 Consolidated Metadata by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2113
  • feature(threading): use explicit/configurable thread pool executor by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2327
  • fix(RemoteStore): avoid listing all objects in remote store in empty() method by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2312
  • fix(attrs): update array attrs in place by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2329
  • Use horizontal logo for docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2333
  • Special case str dtype in array creation by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2323
  • Add guide section to top level of docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2332
  • Ensure path created for LocalStore when not in readonly mode. by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2337
  • V3 main sync w/ merge by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2335
  • Revert "V3 main sync w/ merge (#2335)" by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2339
  • V3 main sync merge by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2340
  • document storage classes and some developer apis by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2279
  • Fix/logging store improvements by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2355
  • fix RemoteStore.empty by @rabernat in https://github.com/zarr-developers/zarr-python/pull/2343
  • fix(consolidated metadata): skip .zmetadata key in members search by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2356
  • Update deprecated stage names by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2362
  • Multiple imports for an import name by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2361
  • Fix logo height in doc navbar by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2352
  • Bump sphinx from 8.0.2 to 8.1.3 in the actions group across 1 directory by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2360
  • Move V3 development to main by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2341
  • test(ci): change branch name in v3 workflows by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2368
  • Use lazy % formatting in logging functions by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2366
  • Move roadmap and v3-design documument to docs by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2354
  • Multiple imports for an import name by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2367
  • Enforce ruff/pycodestyle warnings (W) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2369
  • Enforce ruff/pycodestyle preview rules (E) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2370
  • Fix typo by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2382
  • Imported name is not used anywhere in the module by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2379
  • Missing mandatory keyword argument shape by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2376
  • Update ruff rules to ignore by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2374
  • Docstrings for arraymodule by @e-marshall in https://github.com/zarr-developers/zarr-python/pull/2276
  • fix/normalize storage paths by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2384
  • Enforce ruff/flake8-pyi rule PYI013 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2389
  • deps: remove fasteners from list of dependencies by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2386
  • Enforce ruff/flake8-annotations rule ANN003 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2388
  • Enforce ruff/Perflint rules (PERF) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2372
  • chore: update package maintainers by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2387
  • Fixed consolidated Group getitem with multi-part key by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2363
  • chore: add python 3.13 to ci / pyproject.toml by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2385
  • move v3/tests to tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2396
  • Fix reading partial shards by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2397
  • sharding with empty inner chunk and index location start by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2336
  • Add some more numpydoc rules/associated fixes by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2399
  • Enforce ruff/refurb rules (FURB) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2373
  • chore(ci): removed unused codeql action by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2414
  • fix(group): deprecate positional args in Group.{zeros,ones,etc.} by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2416
  • Get rid of pep8speaks - replaced by ruff by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2421
  • test(ci): add test environment for upstream dependencies by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2418
  • fix(array): thread order parameter through to Array.init by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2417
  • test(ci): Add CI for minimum supported dependency versions by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2423
  • fix(remotestore): raise error if path includes scheme by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2348
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2427
  • [v3] Array.append by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2413
  • Fix JSON encoding of complex fill values by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2432
  • support zero-sized chunks by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2434
  • Refactors v2 codec handling by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2425
  • feature(group): add group setitem api by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2393
  • test(ci): test on windows and osx by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2431
  • Bump sphinx-autoapi from 3.3.2 to 3.3.3 in the requirements group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2441
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2443
  • Bump pypa/gh-action-pypi-publish from 1.10.3 to 1.11.0 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2457
  • Make AsyncArray.nchunks_initialized async by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2449
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2462
  • Feature: store learns to delete prefixes when overwriting/creating hierarchy nodes by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2430
  • Move BatchedCodecPipeline to zarr.core by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2086
  • Apply assorted ruff/Pylint rules (PLR) by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2371
  • Zarr.save argument check by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2446
  • Add more ruff rules by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2460
  • AsyncGenerator should not yield None by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2464
  • use as_posix correctly for str and for listdir by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2467
  • Missing mandatory keyword argument by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2465
  • Remove useless {...!s} by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2471
  • Add docstrings for array module by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/2281
  • AsyncGenerator → AsyncIterator by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2381
  • Bump pypa/gh-action-pypi-publish from 1.11.0 to 1.12.2 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2479
  • Stateful tests for array/group manipulation by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2189
  • Added info for Group and Array by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2400
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2482
  • Explicitly clear store in hypothesis strategy by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2481
  • Assorted small fixes for f-strings by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2477
  • Unreachable code by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2483
  • Refactor: store mode and initialization by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2442
  • Added Group.tree method by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2433
  • Bump numcodecs by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2488
  • Added Store.getsize by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2426
  • fix open_array for mode r+ by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2494
  • don't normalize paths in StorePath.delete_dir by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2493
  • handle empty string prefix in zipstore delete dir by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2492
  • Add documentation for zarr.core.group by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2452
  • Add CZI Badge to README by @MSanKeys963 in https://github.com/zarr-developers/zarr-python/pull/2489
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2502
  • [v3] Import crc32c through numcodecs by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2510
  • Remove asciitree dependency by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2511
  • Refactor/narrow array name type by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2499
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2517
  • Multiple imports for an import name by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2504
  • Added Array.info_complete by @TomAugspurger in https://github.com/zarr-developers/zarr-python/pull/2514
  • Fix iterating over sharding index by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2392
  • Imported name is not used anywhere in the module by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2520
  • Update ruff and associated changes by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2522
  • [v3] Makes data contiguous in v2 codec by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2515
  • Error when attempting to set with an array of incompatible shape. by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2512
  • Bump sphinx-autoapi from 3.3.3 to 3.4.0 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2525
  • zarr.storezarr.storage by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2523
  • Move stateful tests to public testing API by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2531
  • add a complete step to the test CI by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2521
  • DOC: Proposed updates to contributor guide. by @rossbar in https://github.com/zarr-developers/zarr-python/pull/2513
  • Parse chunk shape to check for float values by @faymanns in https://github.com/zarr-developers/zarr-python/pull/2535
  • chore(deps): make fsspec and upath optional dependencies by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2534
  • [v3] implement / deprecate zarr.tree by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2537
  • Improve installation page by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2538
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2547
  • Improve pre-commit configuration by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2551
  • Apply ruff preview rule RUF036 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2524
  • rename exists_ok to overwrite by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2548
  • Feat/latency store by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2474
  • rename RemoteStore -> FsspecStore by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2557
  • Bump pypa/gh-action-pypi-publish from 1.12.2 to 1.12.3 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2562
  • Clean up optional dependency groups by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2541
  • add warnings when using non-spec features with v3 by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2556
  • Shorten contributing page title by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2565
  • Remove specs pages from docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2555
  • Trim trailing whitespace using pre-commit by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2563
  • Remove config warning if only one implementation exists by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2571
  • Remove license page from docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2570
  • docs/add docstrings to synchronous API by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2549
  • deps: add packaging to required deps by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2573
  • correct array.nbytes, and add tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2576
  • Add default compressors to config by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2470
  • Remove temporary doc specific to branch V3 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2578
  • Feat/write empty chunks by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2429
  • Multiple imports for an import name by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2580
  • test and fix indexing for scalar arrays by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2583
  • Un-mark memory store as "for testing" by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2601
  • remove test.py by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2612
  • Note that whole directories can be deleted in LocalStore by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2606
  • fix: run-coverage command now tracks src directory by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2615
  • Don't document zarr.codec submodules by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2605
  • Improve deprecation of zarr.creation and zarr.convenience by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2609
  • top-level functions for reading, creating data by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2463
  • Improve docstrings of zarr.api.synchronous by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2610
  • Improve exception docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2624
  • docs: split tutorial into multiple user guide sections by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2589
  • show pprint import by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2632
  • Fix open(..., mode='w') to create a group by @jni in https://github.com/zarr-developers/zarr-python/pull/2629
  • Clean up public store API by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2603
  • docs: add migration page to user guide by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2596
  • Move 'about' to end of table of contents by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2636
  • docs: replace getting_started page with quickstart by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2590
  • docs: consolidate developer docs + update contributing page for v3 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2593
  • docs: update doc homepage by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2594
  • Fix create_dataset with data kwarg by @jni in https://github.com/zarr-developers/zarr-python/pull/2638
  • Align lines for improved rendering by @rtobar in https://github.com/zarr-developers/zarr-python/pull/2648
  • Adds documentation for sharding and sharding in Array.info by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2644
  • Move deprecation notices to the top of docstrings by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2637
  • Improve API reference doc structure by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2635
  • Consistent use of 'Zarr format 2 or 3' by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2645
  • Adds filters, compressors and serializer props to Array by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2652
  • Don't draw invalid shapes in test_vindex by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2651
  • Separate defaults for filters, serializers and compressors in v3 by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2653
  • Add moto[server] to test deps for FsspecStore by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/2657
  • chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2660
  • Zarr v2 + Zstd: Don't persist the checksum param if false by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2655
  • Feat/concurrent members by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2519
  • Fix Group.array() with data argument by @tomwhite in https://github.com/zarr-developers/zarr-python/pull/2668
  • Make make_store_path private by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2628
  • add known bugs to work in progress section of the v3 migration guide by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2670
  • Fix json indent by @will-moore in https://github.com/zarr-developers/zarr-python/pull/2546
  • fix: threadpool configuration by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2671
  • api: hide zarr.core from api docs by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2669
  • Clean up release notes in preparation for v3 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2634
  • Use dataclasses for ByteRangeRequests by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/2585

New Contributors

  • @JackKelly made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1528
  • @ziw-liu made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1540
  • @rossbar made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1550
  • @ph03 made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1581
  • @jeffpeck10x made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1615
  • @maxrjones made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1654
  • @hoodmane made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1663
  • @DahnJ made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1689
  • @dcherian made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1724
  • @itcarroll made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1604
  • @aldenks made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1643
  • @Charoula-Kyriakides made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1792
  • @brokkoli71 made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1961
  • @e-marshall made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2070
  • @akshaysubr made their first contribution in https://github.com/zarr-developers/zarr-python/pull/1967
  • @sneakers-the-rat made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2142
  • @lindseynield made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2210
  • @agoodm made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2158
  • @rtobar made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2648
  • @will-moore made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2546

Full Changelog: https://github.com/zarr-developers/zarr-python/compare/v2.16.1...v3.0.0

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