unipept/unipept: 6.1.0

This is a major new release for Unipept, including some very exciting new features. Version 6.1.0 introduces a web-based version of the Peptonizer2000. The Peptonizer2000 aims to bring confidence to the world of metaproteomics (see this publication for a detailed explanation) and has now been directly integrated into Unipept.

Instead of peptide lists, Unipept now also supports uploading CSV, TSV or PSMS-files (or any column-based file), using our new file upload wizard. Using this wizard, it's possible to extract specific columns (i.e. peptides or scores) from an input file and use them in your analyses.

We've also completely reworked the UI of the metaproteomics analysis page. In close resemblance to the Unipept Desktop application, Unipept now also supports projects on the web.

New features / enhancements:

• Peptonizer 2000: Direct integration of the Peptonizer 2000 pipeline into the Unipept Web application. You no longer need to download and setup a Python workflow to start peptonizing your samples! (#1574)
• File upload wizard: Drag and drop any kind of column-based file into Unipept and conveniently select which columns should be processed. (#1574)
• Sample explorer: Samples can be organized into groups and are always shown in a clear file explorer on the left side of the "metaproteomics analysis" page. (#1574)

Minor changes and bug fixes:

• Added a link to the Unipept Tutorial on the publications page (#1573)
• Added SIHUMI dataset as sample inputs
• Implemented feature to upload file as peptide list (#1560)
• Fixed a lot of minor issues with the exports of data from Unipept (#1571)
• Fixed the "equate I and L" option was always checked (#1567)