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Published January 6, 2025 | Version 2025-01-06
Software Open

AlexsLemonade/OpenScPCA-analysis: 2025-01-06

Authors/Creators

  • 1. @AlexsLemonade
  • 2. Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation
  • 3. St. Anna Children's Cancer Research Institute (CCRI)
  • 4. Alex's Lemonade Stand Foundation
  • 5. UT Southwestern
  • 6. MD Anderson Cancer Center
  • 7. UCL

Description

What's Changed

  • Add last group of cell type ontology IDs by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/928
  • Third group of cell ontology assignments by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/926
  • Update monthly GHA timing by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/930
  • Compare clusters to cell types and marker gene set expression by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/934
  • Document terms we aren't sure about in cell ontology by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/937
  • Fix broken website links by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/943
  • Initiate seurat-conversion by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/946
  • hello-clusters notebook: Perform and evaluate clustering by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/874
  • Update dockerfile in consensus module to use renv by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/950
  • Add table with number of clusters to Ewing clustering report by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/938
  • Exploration notebook for creating a reference of consensus labels by @allyhawkins in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/936
  • Add Seurat conversion script by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/953
  • Use docker for seurat-conversion tests by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/955
  • Bump rOpenScPCA version by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/956
  • Small hello-clusters notebook cleanups by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/958
  • Dictionary and spelling by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/960
  • Only skip push step in build action by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/961
  • Add Changelog for 0.2.0 by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/962
  • Issue title update for Docker failures by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/964
  • Add example table to analysis/README by @sjspielman in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/947
  • try to catch copykat error by @jashapiro in https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/966

Full Changelog: https://github.com/AlexsLemonade/OpenScPCA-analysis/compare/2024-12-03...2025-01-06

Files

AlexsLemonade/OpenScPCA-analysis-2025-01-06.zip

Files (1.3 GB)

Additional details

Related works

Is supplement to
Software: https://github.com/AlexsLemonade/OpenScPCA-analysis/tree/2025-01-06 (URL)

Software

Repository URL
https://github.com/AlexsLemonade/OpenScPCA-analysis