Published January 5, 2025 | Version 1.0.0
Model Open

BPNet models used as Ledidi examples

Description

This includes a set of BPNet models trained using bpnet-lite along with the training parameter files used for evaluating Ledidi. The training parameter files include the ENCODE accessions for the signal and peak files used for training. The models were trained using PyTorch and can be loaded and used with the bpnet-lite repository, where they are instances of the `BPNet` object.

Files

ATAC.fit.json

Files (31.2 MB)

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md5:2f84331d179edc9f6979c565faef4b83
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Additional details

Software

Repository URL
https://github.com/jmschrei/bpnet-lite
Programming language
Python
Development Status
Active