Published January 5, 2025
| Version 1.0.0
Model
Open
BPNet models used as Ledidi examples
Authors/Creators
Description
This includes a set of BPNet models trained using bpnet-lite along with the training parameter files used for evaluating Ledidi. The training parameter files include the ENCODE accessions for the signal and peak files used for training. The models were trained using PyTorch and can be loaded and used with the bpnet-lite repository, where they are instances of the `BPNet` object.
Files
ATAC.fit.json
Files
(31.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:6806dde52ed3ccbe8bda520cd1a2fc67
|
737 Bytes | Preview Download |
|
md5:30fa85c5e75ed5f0ba2e6cb1c2ecf723
|
25.7 MB | Download |
|
md5:5ae56023d6a60fe4f2911b6b2a708ebd
|
742 Bytes | Preview Download |
|
md5:030b31f70c3676bd67207f504b51c7f8
|
502.2 kB | Download |
|
md5:ce5bef557e2e2bf909ae08fcce686e86
|
474 Bytes | Preview Download |
|
md5:32058fd94d12c00be2d816b1ac2c6a59
|
490.1 kB | Download |
|
md5:672af750bb10a8557919f58495f8cddf
|
474 Bytes | Preview Download |
|
md5:6b10a4036f921999e25fd770e71e24df
|
492.1 kB | Download |
|
md5:49abf2e73480d11a3a7d42914a121325
|
479 Bytes | Preview Download |
|
md5:f622b03d8a0bf6a60b9adf2e1a010352
|
505.6 kB | Download |
|
md5:2a5f5902395d3f6a7fb0bd788e2a0fc7
|
458 Bytes | Preview Download |
|
md5:6172c035f1e9d13ae1612092c76636d6
|
473.5 kB | Download |
|
md5:1247735a888cf1e1a753cca05899958c
|
469 Bytes | Preview Download |
|
md5:ef8cfc983567e74a1c4b1a7eee2cc9c5
|
513.0 kB | Download |
|
md5:22cb7ec7962a07525e2df4360b129317
|
479 Bytes | Preview Download |
|
md5:233367b0d7879f052bcf5f6c96138544
|
488.2 kB | Download |
|
md5:762553c41d151f5534a299c2fe389059
|
469 Bytes | Preview Download |
|
md5:6663d95b1299ae1433881a7a51884d14
|
492.1 kB | Download |
|
md5:7554262e879dee79d5f422d1fa89c313
|
458 Bytes | Preview Download |
|
md5:90a21a26ccb15e41d4a568d426cd5c3f
|
473.4 kB | Download |
|
md5:f41d70611566c96dcdafb88b32a93d0c
|
479 Bytes | Preview Download |
|
md5:46bd12e1270aa7da7183d86f1a280a1c
|
551.2 kB | Download |
|
md5:320d001abe26f9d632c796a01cdffacf
|
458 Bytes | Preview Download |
|
md5:2f84331d179edc9f6979c565faef4b83
|
492.0 kB | Download |
Additional details
Software
- Repository URL
- https://github.com/jmschrei/bpnet-lite
- Programming language
- Python
- Development Status
- Active