NFDI4Microbiota

There is a newer version of the record available.

Published January 3, 2025 | Version v5
Dataset Open

Human intestinal Bacteria Collection (HiBC): Isolates and genomes metadata

Authors/Creators

  • 1. University Hospital of RWTH Aachen
  • 2. ROR icon Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures
  • 3. ROR icon Helmholtz Centre for Infection Research
  • 4. ROR icon University of Vienna
  • 5. ROR icon Technical University of Munich
  • 6. ROR icon University of Nottingham
  • 7. RWTH Aachen University
  • 8. ROR icon University of Duisburg-Essen
  • 9. ROR icon German Center for Infection Research
  • 10. ROR icon Medizinische Hochschule Hannover
  • 11. Technical University Braunschweig

Description

The Human intestinal Bacteria Collection (HiBC) is a collection of bacterial strains, isolated from the human gut for which 16S rRNA gene sequences, genome sequences and culture conditions are made available to the research community. In addition to previously described bacteria, we include strains that represent novel species which have been taxonomically described and validly named, or will be in the future. This collection will be updated regularly.

This dataset includes the taxonomy of the isolates, as well as metadata regarding their cultivation and isolation. We also provide metadata regarding the sequencing, genome assembly process and the biological sequences.

UPDATE v5: The accessions number for the genomes on INSDC databases are added under the column Accession. Plus two typos in the risk group column have been corrected as follow:

  • CLA-AA-H173: from Risk Group 4 (!) to 2 like the other strain of Sutterella wadsworthensis
  • CLA-AA-H198: from Risk Group 4 (!) to 1 like the other Bifidobacterium species.

UPDATE v4: Only the taxonomy of a couple of isolates has been changed, as follow:

  • CLA-ER-H4: Collinsella sp900547855 instead of Collinsella sp900544645
  • CLA-AA-H142: Pilosibacter fragilis (f__Clostridiaceae) instead of Sakamotonia hominis gen. nov. (f__Lachnospiraceae)
  • CLA-AA-H58: Pilosibacter fragilis (f__Clostridiaceae) instead of Sakamotonia hominis gen. nov. (f__Lachnospiraceae)
  • CLA-AA-H89B: Lachnospira intestinalis sp. nov. instead of Lachnospira hominis sp. nov.
  • CLA-JM-H10: Lachnospira hominis sp. nov. instead of Lachnospira intestinalis sp. nov.
  • CLA-JM-H7B: Faecalibacterium taiwanense instead of Faecalibacterium faecis sp. nov.
  • CLA-JM-H45: Merdimmobilis hominis instead of Hominicola intestinalis gen. nov.

UPDATE v3: The genome of one of our isolate had been unfortunately swapped. This mistake has been now corrected on Zenodo and Coscine. The genome of Segatella sinensis CLA-AA-H117 should be considered correct with 103 contigs and 3 671 232 nt. Please note that the genome available at the NCBI is the correct one (GCA_040324585.2). Two typos regarding taxonomy have been corrected as well: Maccoya intestinihominis has been corrected to Maccoyia intestinihominis and Faecousia faecis to Faecousia intestinalis.

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Additional details

Related works

Is continued by
Other: https://hibc.rwth-aachen.de/ (URL)
Is published in
Preprint: 10.1101/2024.06.20.599854 (DOI)
Is supplement to
Dataset: 10.5281/zenodo.12180259 (DOI)
Dataset: 10.5281/zenodo.12755497 (DOI)
Dataset: 10.5281/zenodo.12187897 (DOI)

References