Published January 19, 2025
| Version 1
Computational notebook
Open
Code for "Human and bacterial genetic variation shape oral microbiomes and health"
Authors/Creators
- 1. Broad Institute
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2.
Harvard Medical School
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3.
Brigham and Women's Hospital
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4.
Dana-Farber Brigham Cancer Center
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5.
Howard Hughes Medical Institute
Description
Code for "Human and bacterial genetic variation shape oral microbiomes and health", 1) extraction of unmapped reads in SPARK and quantification of microbial relative abundances with MetaPhlAn 4, 2) Copy number estimation for AMY1 and PRB1, 3) PSV genotyping in AMY1, 4) extraction of unmapped reads in SPARK and alignment to microbial references, 5) normalization of read depth
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Additional details
Funding
- National Institutes of Health
- F31 DE034283
Dates
- Available
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2025-01-19