JWST Calibration Pipeline

What's Changed

• use towncrier to handle changelog entries by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8671
• switch default branch name to main in docs/ci by @braingram in https://github.com/spacetelescope/jwst/pull/8210
• [docs] add new steps to pull request checklist as change fragment types by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8824
• add CI check that CHANGES.rst is not modified by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8827
• Remove unnecessary test after pastasoss inclusion by @tapastro in https://github.com/spacetelescope/jwst/pull/8825
• Fix clean_flicker_noise test for system differences by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8817
• JP-3728: Deprecate Step.__call__ by @braingram in https://github.com/spacetelescope/jwst/pull/8761
• Speed up regtests by reorganizing test_nirspec_ifu_spec3 by @braingram in https://github.com/spacetelescope/jwst/pull/8811
• JP-3741: Faster temporary file I/O for outlier detection in on-disk mode by @emolter in https://github.com/spacetelescope/jwst/pull/8782
• JP-3763: Fix crash combining full and subarray for background by @thomaswilliamsastro in https://github.com/spacetelescope/jwst/pull/8787
• MNT: Use hash for Action workflow versions and update if needed by @pllim in https://github.com/spacetelescope/jwst/pull/8839
• JP-3768: Move outlier detection median computers to stcal by @emolter in https://github.com/spacetelescope/jwst/pull/8840
• JP-3305: Clean up bad mosaic associations by @tapastro in https://github.com/spacetelescope/jwst/pull/8843
• Fix tolerance for coron test on Linux by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8844
• JP-3768: Fix intermediate issues with non-resampled outlier methods by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8853
• Documentation and code updates clarifying the behavior of the in_memory flag by @emolter in https://github.com/spacetelescope/jwst/pull/8851
• JP-3770: emicorr memory and run time improvement by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8849
• Bump spacetelescope/crds from 12.0.0 to 12.0.2 by @dependabot in https://github.com/spacetelescope/jwst/pull/8862
• Bump actions/checkout from 4.2.0 to 4.2.1 by @dependabot in https://github.com/spacetelescope/jwst/pull/8863
• JP-2928: Update NIRCam WFS regression test data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8867
• JP-2928: Update NIRCam image moving target regression test data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8865
• vendorize and fix crds workflow by @braingram in https://github.com/spacetelescope/jwst/pull/8869
• JP-3705: Remove deprecated nlow and nhigh parameters from outlier detection step by @emolter in https://github.com/spacetelescope/jwst/pull/8870
• JP-3749: Add mypy type checking by @emolter in https://github.com/spacetelescope/jwst/pull/8852
• JP-2928: Move test for moving target updates to unit test by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8873
• JP-2928: Update NIRCam image regression tests by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8871
• fix pre-commit action by @braingram in https://github.com/spacetelescope/jwst/pull/8886
• Use nanmedian3D for TSO data in outlier detection by @emolter in https://github.com/spacetelescope/jwst/pull/8859
• JP-2928: Update regression test data for NIRSpec spec2 steps by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8884
• JP-2928: Update regression test data for miscellaneous NIRSpec modes by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8895
• Switch okify to GitHub Actions by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8762
• JP-3347: Improve spectral outlier detection by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8828
• Add CRDS cache information for developers by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8900
• JP-3781: Use center=False for compute_s_region_imaging by @emolter in https://github.com/spacetelescope/jwst/pull/8897
• JP-2275: put rtdata okify results in unique directories by @braingram in https://github.com/spacetelescope/jwst/pull/8885
• JP-2928: Update NIRSpec WCS regression test data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8875
• JP-2928: Update regression test data for NIRCam subarray by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8881
• Store NIRISS sourcefind regression test catalog in rtdata by @tapastro in https://github.com/spacetelescope/jwst/pull/8902
• JP-3342: Reorganize outlier detection documentation by @emolter in https://github.com/spacetelescope/jwst/pull/8880
• Fix numpy 2 warnings emitted from skymatch by @WilliamJamieson in https://github.com/spacetelescope/jwst/pull/8892
• JP-3721: Simplify ModelContainer by @emolter in https://github.com/spacetelescope/jwst/pull/8831
• JP-3785: Add tangent plane transform corrections in NIRSpec spectral resampling by @hayescr in https://github.com/spacetelescope/jwst/pull/8908
• JP-3725: Remove DefaultOrderedDict by @emolter in https://github.com/spacetelescope/jwst/pull/8915
• Colorize the test results by @WilliamJamieson in https://github.com/spacetelescope/jwst/pull/8891
• JP-2928: Update regression test data for NIRSpec lamps by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8898
• JP-3788: Tweak spaxel debugging by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8913
• JP-3787: Use meta.asn.exptype in ModelLibrary by @braingram in https://github.com/spacetelescope/jwst/pull/8918
• Switch resample to the new drizzle package API by @mcara in https://github.com/spacetelescope/jwst/pull/8866
• JP-3750: Fix IFU cube moving target RA, Dec metadata by @emolter in https://github.com/spacetelescope/jwst/pull/8911
• JP-2928: Update NIRCam tsgrism and tsimg regression test data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8877
• JP-3102 follow-up: Catch source_pos nans from msa file by @tapastro in https://github.com/spacetelescope/jwst/pull/8874
• JP-3782: Fix improper setting of AREA extension in coron3 pipeline by @emolter in https://github.com/spacetelescope/jwst/pull/8907
• mention strun package name usage in docs by @braingram in https://github.com/spacetelescope/jwst/pull/8926
• Bump actions/checkout from 4.2.1 to 4.2.2 by @dependabot in https://github.com/spacetelescope/jwst/pull/8929
• Bump actions/setup-python from 5.2.0 to 5.3.0 by @dependabot in https://github.com/spacetelescope/jwst/pull/8930
• JP-2928: Update FGS guider test data, add image3 test by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8923
• JP-2928: Update regression tests to use flight data - set_telescope_pointing.add_wcs edition by @tapastro in https://github.com/spacetelescope/jwst/pull/8887
• include lib tests xml and db files in package data by @braingram in https://github.com/spacetelescope/jwst/pull/8935
• JP-3426: Ensure proper order of bitwise operations by @tapastro in https://github.com/spacetelescope/jwst/pull/8916
• remove schema_editor by @braingram in https://github.com/spacetelescope/jwst/pull/8909
• JP-2928, JP-3792: MIRI LRS master background by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8927
• AL-837: Compute resample output WCS from known s_region instead of recalculating footprints by @emolter in https://github.com/spacetelescope/jwst/pull/8893
• JP-2928: Update remaining NIRSpec FS and BOTS pre-flight data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8922
• JP-2928: Update data for MIRI dark pipeline tests by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8925
• JP-2928: Update MIRI MRS test data by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8936
• JP-2928: Update test data for NIRSpec master background by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8912
• Remove all (including pipeline) uses of Step.__call__ by @braingram in https://github.com/spacetelescope/jwst/pull/8945
• Update changelog and README to reflect patch release by @tapastro in https://github.com/spacetelescope/jwst/pull/8960
• JP-3800 update dark current documentation to remove confusing statement about bias subtraction by @jemorrison in https://github.com/spacetelescope/jwst/pull/8955
• bump min crds for build context by @braingram in https://github.com/spacetelescope/jwst/pull/8950
• don't store empty columns in HDRTAB by @braingram in https://github.com/spacetelescope/jwst/pull/8958
• JP-3798: Transfer datamodel wcsinfo during Spec2Pipeline MOS+FS processing by @tapastro in https://github.com/spacetelescope/jwst/pull/8947
• JP-3746: Improve background combination for NIRSpec MOS master background by @hayescr in https://github.com/spacetelescope/jwst/pull/8932
• restructure test_miri_mrs_badpix_selfcal_bkg to allow it to be okified by @braingram in https://github.com/spacetelescope/jwst/pull/8971
• JP-3799: First frame bright by @karllark in https://github.com/spacetelescope/jwst/pull/8952
• unskip a regression test by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8953
• JP-3771: Add Multiprocessing Regression Tests for Ramp and Jump Steps by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/8931
• JP-3742: Remove allowed_memory and associated environment variable by @emolter in https://github.com/spacetelescope/jwst/pull/8975
• Cleanup validationwarning by @braingram in https://github.com/spacetelescope/jwst/pull/8976
• in Badpixel_self cal add log message on number of pixels flagged by @jemorrison in https://github.com/spacetelescope/jwst/pull/8973
• Remove testing statement to ignore import failure by @tapastro in https://github.com/spacetelescope/jwst/pull/8977
• JP- 3778 Allow the RSCD correction to work on segmented TSO data by @jemorrison in https://github.com/spacetelescope/jwst/pull/8946
• update test for numpy 2 compatibility by @braingram in https://github.com/spacetelescope/jwst/pull/8982
• bump asdf upper pin by @braingram in https://github.com/spacetelescope/jwst/pull/8966
• Bump OpenAstronomy/github-actions-workflows from 1.13.0 to 1.14.0 by @dependabot in https://github.com/spacetelescope/jwst/pull/8988
• JP-3677: Add maximum_shower_amplitude parameter to jump step by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8890
• avoid file clobbering in okify by @braingram in https://github.com/spacetelescope/jwst/pull/8970
• JP-3598: The ResampleSpecStep and Extract1DStep within MasterBackgroundMosStep are inaccessible by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8847
• JP-3664: Fix shuttrid negative values under numpy 2 by @stscirij in https://github.com/spacetelescope/jwst/pull/8978
• JP-3718: Improve AMI observable averaging, error calculations by @rcooper295 in https://github.com/spacetelescope/jwst/pull/8846
• remove okify_regtests script (moved to ci_watson) by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8957
• Bump OpenAstronomy/github-actions-workflows from 1.14.0 to 1.15.0 by @dependabot in https://github.com/spacetelescope/jwst/pull/8999
• Update MIRI MRS spec3 regtest for new cube defaults by @melanieclarke in https://github.com/spacetelescope/jwst/pull/9002
• [CI] set default CRDS context to jwst-edit by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8987
• JP-3753: Refactor extract1d by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8961
• JP-3739: Update NRM geometry, affine distortion use by @rcooper295 in https://github.com/spacetelescope/jwst/pull/8974
• JP-3745: Fixed SUBSTRIP96 flux drop by @hover2pi in https://github.com/spacetelescope/jwst/pull/8983
• Make sure bounding box is attached as order F by @WilliamJamieson in https://github.com/spacetelescope/jwst/pull/8963
• rename pytest plugin to pytest_jwst include in wheel by @braingram in https://github.com/spacetelescope/jwst/pull/9009
• pin stcal to commit by @braingram in https://github.com/spacetelescope/jwst/pull/9010
• JP-1136: Compute scaling for WFSS background subtraction using error-weighted mean by @emolter in https://github.com/spacetelescope/jwst/pull/8990
• AL-852: GWCS inverse transform should respect its bounding box by @nden in https://github.com/spacetelescope/jwst/pull/8554
• update minimum deps by @braingram in https://github.com/spacetelescope/jwst/pull/9021
• JP-3622 Update refpix step for NIR detectors to use convolution kernel by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8726
• preparation for 1.17.0 release by @tapastro in https://github.com/spacetelescope/jwst/pull/9024

New Contributors

• @hover2pi made their first contribution in https://github.com/spacetelescope/jwst/pull/8983

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.16.0...1.17.0