flu-crew/dairy-cattle-hpai-2024: v1.0.2 revision of analysis: Nguyen et al
Authors/Creators
Description
-inclusion of BEAUTI/BEAST xml files to calculate evolutionary rates for the cattle only clade -inclusion of additional SNV tables (Data S6 and Data S7).
Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattle
Thao-Quyen Nguyen, Carl R. Hutter, Alexey Markin, Megan Thomas, Kristina Lantz, Mary Lea Killian, Garrett M. Janzen, Sriram Vijendran, Sanket Wagle, Blake Inderski, Drew R. Magstadt, Ganwu Li, Diego G. Diel, Elisha Anna Frye, Kiril M. Dimitrov, Amy K. Swinford, Alexis C. Thompson, Kevin R. Snekvik, David L. Suarez, Steven M. Lakin, Stacey Schwabenlander, Sara C. Ahola, Kammy R. Johnson, Amy L. Baker, Suelee Robbe-Austerman, Mia Kim Torchetti, Tavis K. Anderson. bioRxiv 2024.05.01.591751; doi: https://doi.org/10.1101/2024.05.01.591751
Files
flu-crew/dairy-cattle-hpai-2024-v1.0.2.zip
Files
(71.7 MB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/flu-crew/dairy-cattle-hpai-2024/tree/v1.0.2 (URL)
Software
- Repository URL
- https://github.com/flu-crew/dairy-cattle-hpai-2024