Published 2024
| Version v2
Dataset
Open
Spotiflow - benchmarking datasets
Authors/Creators
-
Dominguez Mantes, Albert1
- Herrera, Antonio1
- Khven, Irina1
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Schlaeppi, Anjalie1
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Kyriacou, Eftychia1
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Tsissios, Georgios1
- Skoufa, Evangelia1
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Santangeli, Luca2
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Buglakova, Elena3
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Durmus, Emine Berna1
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Manley, Suliana4
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Kreshuk, Anna3
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Arendt, Detlev3, 5
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Aztekin, Can1
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Lingner, Joachim1
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La Manno, Gioele1
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Weigert, Martin6, 1
- 1. École Polytechnique Fédérale de Lausanne
- 2. EMBL Heidelberg Genome Biology
-
3.
European Molecular Biology Laboratory
- 4. Ecole Polytechnique Federale de Lausanne
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5.
University of Heidelberg
-
6.
Technische Universität Dresden
Description
Fluorescence spot detection datasets used in the paper "Spotiflow: accurate and efficient spot detection for fluorescence microscopy with deep stereographic flow regression". Consists of eight different annotated datasets of synthetic (2), FISH (4) and live-cell imaging (2).
Files
spotiflow_datasets.zip
Additional details
Related works
- Is published in
- Preprint: 10.1101/2024.02.01.578426 (DOI)
Software
- Repository URL
- https://github.com/weigertlab/spotiflow
- Programming language
- Python , C++
- Development Status
- Active
References
- Eichenberger B., Zhan Y. (2020). Datasets. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12958037.v1
- Zhang M., Eichhorn S.W., Zingg B. et al. Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH. Nature 598, 137–143 (2021).
- Finn E.H., Pegoraro G., Brandão H.B., et al. Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization. Cell. 2019. doi: 10.1016/j.cell.2019.01.020.