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Published December 10, 2024 | Version v3
Dataset Open

Rapid establishment of species barriers in plants compared to animals

Authors/Creators

  • 1. Univ. Lille
  • 2. CNRS
  • 3. Ghent University

Description

fasta_sequences.zip: Plant datasets used for demographic inference in the "plants versus animals" comparison.
Each archive corresponds to a genus, with the exception of Howea and Linospadix, which are treated as a single dataset.
These archives contain at least one "genus_populations.fasta" file corresponding to the individual genotypes used for inferences.
Where required, there is also a "genus_reference.fasta" file corresponding to the reference used for read mapping.
All references used are coding sequences (CDS).

figures.zip: Figures of the article, produced by the script scripts/figures_plants_animals.R using data from results/

results.zip: Include information about the different species pairs in plants and animals, such as the statistics used for demographic inferences, the results of these inferences, geographic distances, and the outcomes of the goodness-of-fit tests.

results_selfing_estimates_per_species.zip: Selfing rate estimates for surveyed plant species.

scripts.zip: R-script used to perform statistical analyses on data from the results.zip file and to generate the main and supplementary figures.

QuIBL_DILS.zip: Scripts, simulated datasets, and figures for the QuIBL and DILS comparison.

Auxiliary_Tables.ods: Auxiliary tables providing supplementary data and results supporting the analyses presented in the manuscript, including demographic inference statistics, selfing rate estimates, and geographic distance measurements

 

 

 

Notes

update since v1.0: addition of auxliaires tables containing 1. the list of plant data used 2. the origin of the reference coding regions (for mapping from sequencing technologies other than RAD-seq) 3. the results of the demographic inferences

Files

fasta_sequences.zip

Files (3.0 GB)

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md5:7ad0c569d274a2a30b086ad9c8a62402
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md5:32e67536fca462fce937483da66ddf44
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Additional details

References

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