Published December 10, 2024
| Version 3.0.0
Software
Open
nf-core/scrnaseq: 3.0.0
Authors/Creators
- Alexander Peltzer1
- Felipe Marques de Almeida2
- Gregor Sturm1
- heylf
- Olga Botvinnik3
- nf-core bot
- Kevin Menden4
- Adam Talbot5
- gennadyFauna
- Sangram K Sahu6
- Gisela Gabernet
- Robert Syme7
- Pol Avec8
- Maxime U Garcia5
- Harshil Patel9
- Tom Kelly10
- PETER BAILEY11
- Nico Trummer12
- Regina Hertfelder Reynolds
- Felix Krueger13
- alexthiery1
- Chris14
- Azedine Zoufir
- Hanka Medova
- Nick Youngblut15
- an-altosian16
- Khajidu
- Wei-An Chen
- Edward S. Rice17
- Dongze He16
- 1. Boehringer Ingelheim
- 2. University of Brasilia @compgenunb
- 3. @seanome
- 4. Robert Bosch GmbH
- 5. @seqeralabs
- 6. @lifebit-ai
- 7. Seqera Labs
- 8. Fewsats
- 9. Seqera
- 10. @AgResearch Invermay
- 11. Institute of Cancer Sciences, University of Glasgow
- 12. TUM, Data Science in Systems Biology
- 13. Altos Labs, Cambridge Institute of Science
- 14. National University of Singapore
- 15. Arc Institute
- 16. Altos Labs
- 17. University of Missouri
Description
What's Changed
- Update doc related to simpleaf, alevin-fry and salmon. by @an-altosian in https://github.com/nf-core/scrnaseq/pull/368
- Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in https://github.com/nf-core/scrnaseq/pull/381
- Fix gzip error by @esrice in https://github.com/nf-core/scrnaseq/pull/382
- Add pre-built indexes for Cellranger, Cellranger-arc, simpleaf and simpleaf txp2gene by @FelixKrueger in https://github.com/nf-core/scrnaseq/pull/390
- feat(cellranger count and multi): Add create-bam option to cellranger count and multi pipelines by @kopichris in https://github.com/nf-core/scrnaseq/pull/387
- Standardize conversion workflow by @fmalmeida in https://github.com/nf-core/scrnaseq/pull/369
- Remove universc subworkflow from pipeline by @fmalmeida in https://github.com/nf-core/scrnaseq/pull/396
- Better readme statement by @apeltzer in https://github.com/nf-core/scrnaseq/pull/405
- include nac conversion workflow by @fmalmeida in https://github.com/nf-core/scrnaseq/pull/406
See also the CHANGELOG.
New Contributors
- @an-altosian made their first contribution in https://github.com/nf-core/scrnaseq/pull/368
- @esrice made their first contribution in https://github.com/nf-core/scrnaseq/pull/382
- @FelixKrueger made their first contribution in https://github.com/nf-core/scrnaseq/pull/390
- @kopichris made their first contribution in https://github.com/nf-core/scrnaseq/pull/387
Full Changelog: https://github.com/nf-core/scrnaseq/compare/2.7.1...3.0.0
Files
nf-core/scrnaseq-3.0.0.zip
Files
(28.2 MB)
| Name | Size | Download all |
|---|---|---|
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md5:a6ceeaa1bf3a25c13cf7f3e5ef06839f
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28.2 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/scrnaseq/tree/3.0.0 (URL)
Software
- Repository URL
- https://github.com/nf-core/scrnaseq