nf-core/scrnaseq: 3.0.0

What's Changed

• Update doc related to simpleaf, alevin-fry and salmon. by @an-altosian in https://github.com/nf-core/scrnaseq/pull/368
• Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in https://github.com/nf-core/scrnaseq/pull/381
• Fix gzip error by @esrice in https://github.com/nf-core/scrnaseq/pull/382
• Add pre-built indexes for Cellranger, Cellranger-arc, simpleaf and simpleaf txp2gene by @FelixKrueger in https://github.com/nf-core/scrnaseq/pull/390
• feat(cellranger count and multi): Add create-bam option to cellranger count and multi pipelines by @kopichris in https://github.com/nf-core/scrnaseq/pull/387
• Standardize conversion workflow by @fmalmeida in https://github.com/nf-core/scrnaseq/pull/369
• Remove universc subworkflow from pipeline by @fmalmeida in https://github.com/nf-core/scrnaseq/pull/396
• Better readme statement by @apeltzer in https://github.com/nf-core/scrnaseq/pull/405
• include nac conversion workflow by @fmalmeida in https://github.com/nf-core/scrnaseq/pull/406

See also the CHANGELOG.

New Contributors

• @an-altosian made their first contribution in https://github.com/nf-core/scrnaseq/pull/368
• @esrice made their first contribution in https://github.com/nf-core/scrnaseq/pull/382
• @FelixKrueger made their first contribution in https://github.com/nf-core/scrnaseq/pull/390
• @kopichris made their first contribution in https://github.com/nf-core/scrnaseq/pull/387

Full Changelog: https://github.com/nf-core/scrnaseq/compare/2.7.1...3.0.0