Published December 5, 2024
| Version v1
Model
Open
Amyloid segmentation - model and data for ground truth test
Authors/Creators
Description
Model for segmentation of amyloid plaques from z-stacks obtained using two-photon microscopy.
Segmentation was performed using Ilastik, with pixel classification tool: https://www.ilastik.org
Segmentation_Amyloid.ilp – Model for Ilastik
Calculations.xlsx – Excel for calculation of indexes
Test25slides_Probabilities.h5 - Segmented file with 25 frames
Test25slides_raw.tif – Raw data for 25 frames
66p4_ROI2_B_Male_Probabilities.h5 – Dataset with 100 frames (segmented).
66p4_ROI2_B_Male.tif – Raw data of 100 frames.
Files
66p4_ROI2_B_Male.tif
Files
(386.5 MB)
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