Code and data for: Exploring and mitigating shortcomings in single-cell differential expression analysis with a new statistical paradigm

This zip file contains the data and analysis results represented in the preprint.

The analysis folder includes the files for preprocessing, the files for analysis and the files for result demonstration.

The data folder includes the single-cell datasets, the processed data, and the intermediate results obtained by the rmarkdown files in analysis folder.

The code folder includes the R code used in the analysis files.