Published November 25, 2024 | Version v1
Dataset Open

OpenVariant: a toolkit to parse and operate multiple input file formats

Creators

  • 1. ROR icon Institute for Research in Biomedicine
  • 2. ROR icon Centro de Investigación Biomédica en Red de Cáncer
  • 3. ROR icon Pompeu Fabra University
  • 4. ROR icon Institució Catalana de Recerca i Estudis Avançats

Description

OpenVariant is a comprehensive toolkit to facilitate seamless reading, parsing and refinement of diverse input file formats in a customizable structure, all within a single process.

On this repository, we present a small dataset for hands-on use with OpenVariant, allowing users to test the tool's functionalities. The dataset can be downloaded using the following commands:

pip install zenodo_get                      
zenodo_get 14215914

For more details check its documentation at: https://openvariant.readthedocs.io/
Or its GitHub repository at: https://github.com/bbglab/openvariant

Files

datasets-openvariant.zip

Files (49.1 MB)

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md5:f12142a8680dc77d08c3202b41b19586
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Additional details

Software

Repository URL
https://github.com/bbglab/openvariant
Programming language
Python
Development Status
Active