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Published November 23, 2024 | Version v2.10.2
Software Open

SysBioChalmers/RAVEN: v2.10.2

Authors/Creators

  • 1. Chalmers University of Technology
  • 2. AIxBIO
  • 3. BioInnovation Institute
  • 4. Chr. Hansen
  • 5. ELIXIR Europe
  • 6. @SysBioChalmers
  • 7. Aalto University
  • 8. Gitter
  • 9. KTH Royal Institute of Technology / Science For Life Laboratory

Description

  • fix:
    • addMets if metNames and not mets identifiers are given
    • addRxns when adding empty subSystems if the model uses cell arrays of cells for subSystems
    • importModel properly parsing of annotations if identifiers.org/name:value is used instead of identifiers.org/name/value
  • features:
    • changeGrRules can change the same grRule for multiple reactions simultaneously
    • replaceMets can use metabolite identifiers instead of metabolite names
  • refactor:
    • use getGenesFromGrRules in checkModelStruct, changeGrRules and importModel, to correctly split and/or relationships
  • documentation:
    • checkRxn clarify what the output represents (solves #572)

Files

SysBioChalmers/RAVEN-v2.10.2.zip

Files (267.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/SysBioChalmers/RAVEN/tree/v2.10.2 (URL)