Published June 10, 2026
| Version v45
Dataset
Open
Dataset for drevalpy
Authors/Creators
- 1. Technische Universität München
- 2. Freie Universität Berlin
Description
All preprocessing details can be found in https://github.com/daisybio/preprocess_drp_data
or at https://github.com/daisybio/drevalpy
Change in this version:
- Removed TOYv1 and TOYv2 because they are now available from nf-core/test-datasets, and we don't want to maintain them at two sites.
Changes before:
- Added pathway activity features (
pathway_features.csv) and SMILES-vector drug embeddings (drug_smilesvec.csv) to all datasets (CCLE, CTRPv1, CTRPv2, GDSC1, GDSC2, BeatAML2, PDX_Bruna). - The pEC50s were shifted by -6 because of the code update -> now corrected.
- Meta now contains the gene lists, so they don't have to be duplicated
- 2 new datasets: BeatAML2 and PDX_Bruna
- Corrected wrong original AUC values of CTRPv2
- Added MolGNet model to meta
- Updated gene lists: intersection gene lists now also intersect BeatAML2 and PDX_Bruna. Reduced gene lists only contain genes contained in all datasets.
Files
CCLE.zip
Files
(5.5 GB)
| Name | Size | |
|---|---|---|
|
md5:e76faf5a2cd41a38007892707e02d8b7
|
2.7 GB | Preview Download |
|
md5:6dc9ad77cdf832d9c4b5e065d6536b94
|
162.2 MB | Preview Download |
|
md5:ef7421ef7c23813b4b86bb7e00d2ce7c
|
366.7 MB | Preview Download |
|
md5:12b6b5dbfd16684a902f223eb6c7103d
|
407.1 MB | Preview Download |
|
md5:a3a6cc49ed57ba1c9b163e56b88cce2f
|
518.5 MB | Preview Download |
|
md5:a338d837e449538ff9726a9dcd02629f
|
546.9 MB | Preview Download |
|
md5:49dc16929c6baa2b5d75c508429fa11f
|
521.5 MB | Preview Download |
|
md5:9088853103ebaec9700bcf741d4ed13a
|
10.5 MB | Preview Download |
|
md5:ff1708e48b853e95bca19d1f33949c70
|
213.3 MB | Download |
|
md5:ee6d83e01b870a7fea8a76c1c6e6f1ec
|
49.6 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Journal article: 10.1038/s41467-026-72903-w (DOI)