ISARICResearch/VERTEX: v2.0.0

What's Changed

• v1.1 by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/4
• CHI-35: Add clustering of free text terms to ISARIC analytics by @ed-phillips in https://github.com/ISARICResearch/VERTEX/pull/2
• Adding Logistic Regression, part of Risk Factors, Insignt Panel into VERTEX by @LuizRaff in https://github.com/ISARICResearch/VERTEX/pull/3
• dev up to date by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/10
• Implementation of Linear Regression & Cox Model by @LuizRaff in https://github.com/ISARICResearch/VERTEX/pull/12
• New additions by @LuizRaff in https://github.com/ISARICResearch/VERTEX/pull/13
• Aws deploy by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/15
• Dev by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/17
• merge from main by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/18
• Merge pull request #18 from ISARICResearch/main by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/19
• Adding kaplan meier analytical / plotting function and Bar Line Graph. by @LuizRaff in https://github.com/ISARICResearch/VERTEX/pull/21
• ci: add docker prune to prevent volume from getting full by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/22
• Merge dev into main by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/24
• Major refactor and add link to RDS by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/26
• allow public projects by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/35
• Fix for running locally, minor UI/filter changes by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/36
• Dashboard filter - use data for country if available by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/37
• ci: change deploy to use SSM over SSH by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/39
• rename PUBLIC, fix for loading files by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/42
• feat: encode project in url by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/40
• fix for groups in Kaplan-Meier function by @tedinburgh in https://github.com/ISARICResearch/VERTEX/pull/45
• Separate projects into the vertex-projects git repo by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/46
• added defaults for knwon hosts by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/48
• added env to deploy job by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/49
• projects repo url set by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/50
• changed default timeout behaviour in prod by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/51
• added preloading by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/52
• Add mpox to file loading system by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/53
• move project preloading to serve_layout function so it happens after … by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/54
• removed preload logic as it hangs the app by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/55
• update dependencies for Flask and Dash to address CVE vulnerabilities by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/56
• Testing by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/60
• Descriptive analytics by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/62
• Stamp commit sha in outputs by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/57
• Tweak visuals CSV cleaning for descriptive-analytics by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/64
• Rename vertex.secrets ~> vertex.vertex_secrets by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/67
• Set up Sphinx docs by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/63
• Badges by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/77
• A few more badges for the README by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/84
• Enhancements by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/86
• Add compatibility shims for legacy imports by @alasdairwilson in https://github.com/ISARICResearch/VERTEX/pull/88
• ci: pin all actions to full commit SHAs by @sr-murthy in https://github.com/ISARICResearch/VERTEX/pull/89

New Contributors

• @ed-phillips made their first contribution in https://github.com/ISARICResearch/VERTEX/pull/2
• @LuizRaff made their first contribution in https://github.com/ISARICResearch/VERTEX/pull/3
• @alasdairwilson made their first contribution in https://github.com/ISARICResearch/VERTEX/pull/15
• @sr-murthy made their first contribution in https://github.com/ISARICResearch/VERTEX/pull/62

Full Changelog: https://github.com/ISARICResearch/VERTEX/compare/v1.0...v2.0.0